Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m17
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01230.1 68418.m00029 FtsJ-like methyltransferase family prot...    43   2e-04
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot...    37   0.015
At5g01230.2 68418.m00030 FtsJ-like methyltransferase family prot...    33   0.24 
At5g27130.1 68418.m03238 MADS-box family protein various predict...    31   0.96 
At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containi...    29   2.2  
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr...    29   3.9  
At2g23080.2 68415.m02751 casein kinase II alpha chain, putative ...    29   3.9  
At2g23080.1 68415.m02752 casein kinase II alpha chain, putative ...    29   3.9  

>At5g01230.1 68418.m00029 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 309

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 4/147 (2%)
 Frame = +1

Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFAN-YTMSLNPLCKAYGVTLTNNSVCV 435
           R R   KLL+ID++F++   V   +DLC  PG ++   +  L    K+   +   +   +
Sbjct: 22  RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLYLPAKSSAESKDGDLPLI 81

Query: 436 YKPTVCKRKNFTTITGP-DKSGDVFDKNVVFEISIKCGNAC--DLVLADGSVDVNGRENE 606
                   +    I G     GD+ +     E+ I+  + C  DLV+ DG+ DV G  + 
Sbjct: 82  ---VAIDLQPMAPIEGVIQVQGDITNARTA-EVVIRHFDGCKADLVVCDGAPDVTGLHDM 137

Query: 607 QERLNFDLIMCETQLILICLRPGGNCV 687
            E +   LI+    ++   L+ GG  +
Sbjct: 138 DEFVQSQLILAGLTIVTHILKEGGKFI 164


>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 821

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 1/144 (0%)
 Frame = +1

Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPL-CKAYGVTLTNNSVCV 435
           R R   KLL++D K+ +       LDLC  PG +    +   P+     G+ L    +  
Sbjct: 23  RSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVAVEKVPVGSLVLGIDLV--PILP 80

Query: 436 YKPTVCKRKNFTTITGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQER 615
            +  V   ++ T      K   V +++ V        +A +LVL DGS +V G   ++  
Sbjct: 81  VRGCVTMTQDITRTECKSKIKQVMEQHGV--------SAFNLVLHDGSPNVGGAWAQEAM 132

Query: 616 LNFDLIMCETQLILICLRPGGNCV 687
               L++   +L    L   GN V
Sbjct: 133 SQNALVIDSVRLATEFLARNGNLV 156


>At5g01230.2 68418.m00030 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 61

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFA 363
           R R   KLL+ID++F++   V   +DLC  PG ++
Sbjct: 22  RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWS 56


>At5g27130.1 68418.m03238 MADS-box family protein various predicted
           MADS box proteins, Arabidopsis thaliana
          Length = 306

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
 Frame = +1

Query: 409 TLTNNSVCVYKPTVCKRKNFTTITG---PDKSGDVFDKNVVFEISIKCGNACDLVLA--- 570
           T T NSV  Y    C  + F++  G   P+ S   FD++    +   CG +   V +   
Sbjct: 176 TFTPNSVNEY----CSDQTFSSFHGDQNPNLSSPSFDQDCYSSLYQICGESSSQVASFDQ 231

Query: 571 DGSVDVNGRENEQERLNFDLIMCETQ 648
           + S ++ G E E+E    +L++ ETQ
Sbjct: 232 NPSSEIQGFETEEEINQINLLLQETQ 257


>At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 653

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 493 SGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERLN 621
           SGD+ +   +  +++K G+  D+V+++  +D+ G+    E  N
Sbjct: 275 SGDIDNGRSIHGLAVKTGSGSDIVVSNALIDMYGKSKWLEEAN 317


>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
           protein bHLH protein, Arabidopsis thaliana,
           PATCHX:E255557
          Length = 589

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 319 VDTFLDLCGGPGEFANYTMSLNP 387
           VDTF +   G GEF ++  +LNP
Sbjct: 246 VDTFFNFNNGGGEFGSWAFNLNP 268


>At2g23080.2 68415.m02751 casein kinase II alpha chain, putative
           identical to probable casein kinase II, alpha chain
           [Arabidopsis thaliana] SWISS-PROT:O64817; similar to
           casein kinase II, alpha chain 1 [Arabidopsis thaliana]
           SWISS-PROT:Q08467
          Length = 307

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 229 SKLFD-KRPTRRPRCWRKLLEIDKKFHVCRHVDTFLDLCGGP 351
           S++F+ K      RC  K+L+  KK  + R +    +LCGGP
Sbjct: 46  SEVFEGKNVNTNERCVIKILKPVKKKKIKREIKILQNLCGGP 87


>At2g23080.1 68415.m02752 casein kinase II alpha chain, putative
           identical to probable casein kinase II, alpha chain
           [Arabidopsis thaliana] SWISS-PROT:O64817; similar to
           casein kinase II, alpha chain 1 [Arabidopsis thaliana]
           SWISS-PROT:Q08467
          Length = 333

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 229 SKLFD-KRPTRRPRCWRKLLEIDKKFHVCRHVDTFLDLCGGP 351
           S++F+ K      RC  K+L+  KK  + R +    +LCGGP
Sbjct: 46  SEVFEGKNVNTNERCVIKILKPVKKKKIKREIKILQNLCGGP 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,291,638
Number of Sequences: 28952
Number of extensions: 289668
Number of successful extensions: 829
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)