Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m15
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...   125   6e-30
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    36   0.006
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.2  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   5.2  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   6.9  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    25   9.1  
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   9.1  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   9.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.1  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    25   9.1  

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score =  125 bits (301), Expect = 6e-30
 Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 7/181 (3%)
 Frame = +2

Query: 113 KTKRGNILKIVREHYLRDDLLCGSAACNTC----PHKDDELVLETS-PDSPCALFDFPH- 274
           +  RG + K+VRE YLR+D+ C S AC  C    P      VLE    + P  L  F H 
Sbjct: 24  RATRGKVQKVVREQYLRNDIPCQSRACPLCRSKLPKDSRGNVLEPILSEKPMFLEKFGHH 83

Query: 275 YLVLDTNVVLHQIDVLEE-DALTNVIILQTVLEEVKHQNTAVFQRLLDIISNKKRKFYSF 451
           YL+ D+N+  H ID LE  +   +VIILQTV  E+  ++  ++ R+  +   K ++F  F
Sbjct: 84  YLIPDSNIFYHCIDALEHPNNFFDVIILQTVFSEISSKSIPLYNRMKRLCQEKTKRFTPF 143

Query: 452 VNEHHKDTYIERSPGEKQNDRNDRSIRKATSWYEYHLSINSLDGKFPKIILVTDDENNRK 631
            NE   DT++ER   E  NDRNDR+IR A SW+  HL+   +     KI+L+TDD  N +
Sbjct: 144 SNEFFVDTFVERLDDESANDRNDRAIRNAASWFASHLASLGI-----KIVLLTDDRENAR 198

Query: 632 L 634
           L
Sbjct: 199 L 199


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 521 RSIRKATSWYEYHLSINSLDGKFPKIILVTDDENNRK 631
           R I K +  YE   ++NS +GK PK    TDDE+N K
Sbjct: 252 RLIMKESKSYENSKALNSAEGKDPKAFFNTDDEDNMK 288


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 244 IGRGLQYQFIIFVWTCVTCCRSAQ*IVTQVMFSYNL--QYVTTLSFGKKGFCSPH 86
           +GR      ++ V+  VT   SA+ I    +F+Y++  QYV   + GK+   + H
Sbjct: 346 MGRAGANATLLLVFMAVTSAASAELIAVSSIFTYDIYKQYVRPRATGKELLYTGH 400


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 432  RESFIHLLMNITRIPI*SAHRVRNKMIGMTDLYVKQHLGTNI 557
            R++FI  L N T +   S  ++RN M+  T L +    G N+
Sbjct: 1022 RDAFIKTLTNFTNLHSTSEIKLRNTMVIKTLLRIASTEGNNL 1063


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 488 SALYRYPCDVH*QMNKTFSFCWKLYPAISGKL 393
           + L  YP + H   ++ FS  W   P+ISG +
Sbjct: 456 TGLLAYPNESHDIASEPFSISWPQNPSISGSV 487


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 323 EEDALTNVIILQTVLEEVKHQNTAVFQRLLDIISNKKRKFY--SFVNEHHKDTYIE 484
           + + + ++  L T   E +H  T  + +L DI+ +KK+ FY  S V  H  D + E
Sbjct: 635 DTETVQSICKLGTGFSE-EHLET-FYNQLKDIVISKKKDFYAHSDVPAHQPDVWFE 688


>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
 Frame = -2

Query: 166 VTQVMFSYN-LQY-----VTTLSFGKKGFCSPHFICVE 71
           + Q  F YN LQY      T L    KGF   HF+CV+
Sbjct: 119 IVQKRFHYNELQYGAALYKTGLLKNPKGFIHIHFVCVD 156


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 92  TTKTFLTKTKRGNILKIVREHYLRDDLLCGSAACN 196
           T K+   +  R N+      + L D++ CGS+ACN
Sbjct: 74  TEKSDYMRFYRLNLFNKECRYNLDDNVACGSSACN 108


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 586 FSIKAIYAQVIFVPRCCFTYRSVIPIILFLTR*ALYIGILV 464
           FS+     Q +F+   C  Y  + P+IL        IG LV
Sbjct: 629 FSVGIFLPQPMFIMLICLCYSIISPLILVFGLIYFIIGFLV 669


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +2

Query: 446 SFVNEHHKDTYIERSPGEKQNDRNDRSIRKATSWYEYHLSI--NSLDGKFPKIILVTDDE 619
           SF      +  + +S  +  ND   ++   ATS  +   ++    L  + P+I+LV DDE
Sbjct: 318 SFTTHLDSNASMAKSFSQISNDSLAKASSVATSMSQMGAAVPTTGLWKRQPRILLVEDDE 377

Query: 620 NNRKL 634
            +R++
Sbjct: 378 LSRRM 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,010
Number of Sequences: 5004
Number of extensions: 60451
Number of successful extensions: 215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)