Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m15
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163...   180   1e-45
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    30   1.8  
07_01_0248 - 1821340-1821996,1823619-1823761,1824239-1824453,182...    29   4.1  
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407...    28   5.4  
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324...    28   5.4  
06_01_0635 + 4623223-4623380,4623529-4623724,4624379-4624894,462...    28   7.1  

>03_01_0207 -
           1633177-1633372,1633623-1633688,1633778-1633859,
           1633942-1634037,1634413-1634518,1634602-1634661,
           1635114-1635234,1635929-1636040,1636118-1636217,
           1636328-1636382,1636489-1636595,1636798-1636850,
           1636989-1637114,1637909-1638065,1638226-1638421,
           1638917-1639073,1639139-1639379,1639475-1639605,
           1639704-1639826,1639929-1639984,1640610-1640767,
           1640847-1640984,1641070-1641123
          Length = 896

 Score =  180 bits (437), Expect = 1e-45
 Identities = 88/182 (48%), Positives = 125/182 (68%)
 Frame = +2

Query: 86  MWTTKTFLTKTKRGNILKIVREHYLRDDLLCGSAACNTCPHKDDELVLETSPDSPCALFD 265
           M  +KTF+ KT+ G + K+VREHYLRDD+ CG+A+C+TC   +  L    S D+   L  
Sbjct: 1   MLQSKTFVKKTRAGRVQKVVREHYLRDDISCGAASCSTCGAVEHPL----SADAAAIL-- 54

Query: 266 FPHYLVLDTNVVLHQIDVLEEDALTNVIILQTVLEEVKHQNTAVFQRLLDIISNKKRKFY 445
                V+DTNVVLHQID+LE  A+ +V++L  VL+EVK++N AVF R+  + SNK R+F+
Sbjct: 55  -----VVDTNVVLHQIDLLENPAIDDVVLLSVVLDEVKNKNLAVFNRIKALCSNKARRFF 109

Query: 446 SFVNEHHKDTYIERSPGEKQNDRNDRSIRKATSWYEYHLSINSLDGKFPKIILVTDDENN 625
            F NEHH+DTY++   GE  NDRNDR+IR AT WY+ HL      G+  K++L+T+D +N
Sbjct: 110 VFTNEHHRDTYVKEMVGESPNDRNDRAIRVATRWYQSHL------GENVKVLLITNDRDN 163

Query: 626 RK 631
           ++
Sbjct: 164 KR 165


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 476 YIERSPGEKQNDRNDRSIRKATSWY-EYHLSINSLDGKFPKIILVTDDENNRK 631
           Y+  SP E   D +D +     SW  EYH  +   D   P   LVT D++  K
Sbjct: 522 YMVPSPHELSKDLDDETEDIQYSWLREYHWEVRGDDKDDPTTYLVTFDDDGAK 574


>07_01_0248 -
           1821340-1821996,1823619-1823761,1824239-1824453,
           1825911-1826049,1826152-1826385,1826504-1826624
          Length = 502

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
 Frame = -2

Query: 277 IMWEIEQSTWRIGRGLQYQFIIFVWTC----VTCCRSAQ*IVTQVMFSYNLQYVTTLSFG 110
           + W I Q  W IG  +   F +  W C      C RS   +  +  ++Y       L   
Sbjct: 62  LAWAIAQLGWVIGPAVLVAFSVITWFCSSLLADCYRSPDPVHGKRNYTYGQAVRANLGVA 121

Query: 109 KKGFCS 92
           K   CS
Sbjct: 122 KYRLCS 127


>07_03_1704 +
           28839628-28839908,28840010-28840123,28840416-28840769,
           28841072-28841268,28841496-28841587,28841700-28842027,
           28842328-28842535,28843555-28843669,28844023-28844190,
           28844804-28845476,28845552-28845758,28845911-28847001
          Length = 1275

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 273 CGKSNKAHGESGEVSNTNSSSLCGHVLHAADPHNK 169
           C K NK    SG +S+T+SSS+ G  +   D + +
Sbjct: 774 CRKMNKPVVSSGNLSSTSSSSVSGSSVSTPDDYQR 808


>07_01_0426 +
           3239274-3239386,3239472-3239702,3242516-3242642,
           3242729-3242788,3242868-3242960,3243073-3243369,
           3243450-3243761,3243857-3244114,3244227-3244375,
           3244470-3245102,3245367-3245640,3245736-3245777,
           3246332-3246586,3246700-3246711
          Length = 951

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 269 GNRTKHMENRERSPIPIHHLCVDM-CYMLQIRTINRHASNVLL 144
           G   + + N ER P+  HH    + C+  Q    N+H S  LL
Sbjct: 315 GELLRRLWNTERKPVSPHHFKAKIACFAPQFSGFNQHDSQELL 357


>06_01_0635 +
           4623223-4623380,4623529-4623724,4624379-4624894,
           4626212-4626276,4626387-4626453
          Length = 333

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 149 EHYLRDDLLCGSAACNTCPHKDDELVLETSPDSPCAL 259
           E  + DDL CGS   +     +D ++LE +P+ P  L
Sbjct: 200 ERRMYDDLWCGSHDQSGIDDSEDVVILEDTPNLPTQL 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,209,594
Number of Sequences: 37544
Number of extensions: 336468
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)