Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m15
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25640| Best HMM Match : Sec23_BS (HMM E-Value=5.1)                  47   1e-05
SB_56986| Best HMM Match : Peptidase_M50 (HMM E-Value=3.8)             31   0.59 
SB_24992| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_8025| Best HMM Match : MNSV_P7B (HMM E-Value=3.8)                   29   2.4  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_23249| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_28869| Best HMM Match : AMP-binding (HMM E-Value=0)                 28   5.5  
SB_26461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)                  28   7.3  
SB_42041| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_39445| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_50513| Best HMM Match : Lig_chan (HMM E-Value=0.0083)               27   9.7  
SB_43548| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_41520| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_34002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_31893| Best HMM Match : I-set (HMM E-Value=2e-22)                   27   9.7  
SB_23835| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_21012| Best HMM Match : A_amylase_inhib (HMM E-Value=7.9)           27   9.7  
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)               27   9.7  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_25640| Best HMM Match : Sec23_BS (HMM E-Value=5.1)
          Length = 291

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
 Frame = +2

Query: 311 IDVLEEDALTNVIILQTVLEEVKHQNTA-VFQRLLDIISNKKRKFYSFVNEHHKDTYIER 487
           +++ E   +  VI  QTV   ++H  +  +  RL +++ + +++   F NE  +  Y+ R
Sbjct: 65  LEIFEFPEIQGVIFFQTVKNHLQHSGSRKLLSRLKNLVKDTRQQCTFFSNEFCEGAYVPR 124

Query: 488 SPGEKQNDRNDRSIRKATSWYEYHLSINSLDGKFPKIILVTDDENNR 628
             GE   D   R       WY +H     L  K P +++VT  E  R
Sbjct: 125 EAGESLQDWQARCTYAGVLWYYHH-----LHEKMP-LVMVTSSEEGR 165


>SB_56986| Best HMM Match : Peptidase_M50 (HMM E-Value=3.8)
          Length = 216

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
 Frame = +3

Query: 189 HVTHVHTKM---MNWYWRPLPILHVLCSISHI---I*YWIL 293
           HV+ +H K+   MNWY  PL +LH++ + S +   + YW++
Sbjct: 106 HVSPLHVKVSEPMNWYHYPLWLLHIVAANSAVAVCLVYWMI 146


>SB_24992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 273 CGKSNKAHGESGEVSNTNSSSLCGHVLHAADPHNKSSRK 157
           CG  N AH  +G  S   + ++C   L  AD  N+S RK
Sbjct: 6   CGGGNGAHALAGVASADPNINVCVFTLSNADRWNESMRK 44


>SB_8025| Best HMM Match : MNSV_P7B (HMM E-Value=3.8)
          Length = 119

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 563 SSDIRTKMLLYV*ICHSYHFVSHPVSALYRYPCDVH*QMNKT 438
           S D    +LL+  +CH  H  +H  S    Y  DVH Q+N T
Sbjct: 13  SEDDDDSVLLWKQLCHMAHVEAHITSLSSGYCKDVHGQVNGT 54


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 350 ILQTVLEEVKHQNTAVFQRLLDII 421
           +LQTV+    H+N AVF+  L+I+
Sbjct: 492 LLQTVMRRTHHENRAVFKNNLEIV 515


>SB_23249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 350 ILQTVLEEVKHQNTAVFQRLLDII 421
           +LQTV+    H+N AVF+  L+I+
Sbjct: 64  LLQTVMRRTHHENRAVFKNNLEIV 87


>SB_28869| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 561

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 266 FPHYLVLDTNVVLHQIDVLEEDALTNVIIL 355
           FP  L LD++++   + V EE+ +TN I+L
Sbjct: 256 FPPRLSLDSHMIGAMLGVFEEEKVTNAIVL 285


>SB_26461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 23/72 (31%), Positives = 31/72 (43%)
 Frame = -1

Query: 623 YFHHPSPILSLGIFHQGYLCSSDIRTKMLLYV*ICHSYHFVSHPVSALYRYPCDVH*QMN 444
           +F    P ++ G+   G  C SD+ T +  ++  CH   FVS PVS     P      M 
Sbjct: 45  FFSLVLPCITYGLSVYG-ACDSDLTT-IQTFLDRCHKRRFVSTPVSIEKYSPSKTVSCMK 102

Query: 443 KTFSFCWKLYPA 408
           K   F   LY A
Sbjct: 103 KLQPFRTTLYVA 114


>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
          Length = 906

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 194 NTCPHKDDELVLETSPDSPCALFDFPHYLVLDTNVVLHQIDVLEEDALT 340
           +TC H   +L++ +S D+   L+DF    +   NV     D +   A +
Sbjct: 274 HTCTHPSQQLIVTSSTDTTFRLWDFRTPSIHSVNVFQGHSDTVRSTAFS 322


>SB_42041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 323 PKHLFDVTQH*YPILDNVGNRTKHMENR 240
           P HL +   H Y  LD++ N+  H++NR
Sbjct: 399 PDHLNNRPDHMYNKLDHLNNKPDHLDNR 426


>SB_39445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 23/72 (31%), Positives = 31/72 (43%)
 Frame = -1

Query: 623 YFHHPSPILSLGIFHQGYLCSSDIRTKMLLYV*ICHSYHFVSHPVSALYRYPCDVH*QMN 444
           +F    P ++ G+   G  C SD+ T +  ++  CH   FVS PVS     P      M 
Sbjct: 45  FFSLVLPCITYGLSVYG-ACDSDLTT-IQSFLDRCHKRRFVSTPVSIKKYSPSKTVSCMK 102

Query: 443 KTFSFCWKLYPA 408
           K   F   LY A
Sbjct: 103 KLQPFRTTLYVA 114


>SB_50513| Best HMM Match : Lig_chan (HMM E-Value=0.0083)
          Length = 417

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 433 LFVGNYIQQSLENCSILMFHFLK 365
           + V NY QQ   +CS++++ F+K
Sbjct: 32  MIVNNYFQQDSSSCSLIVYIFVK 54


>SB_43548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
 Frame = +2

Query: 101 TFLTKTKRGNILKIVREHYLRDDLLCGSAACNTCPHKDDELVLETSPDS-PCALFDFPHY 277
           TF+++  R  +  +V   Y     +CG  + +   H  D +  +    S PC++   PH 
Sbjct: 632 TFVSEGDRTLVTVVVNGKYDIPLSVCGCNSIHRAAHHSDHIRFDRLGGSHPCSV---PHL 688

Query: 278 LVLDTNVVLHQIDVLEEDALTNVIILQTVLEEVKHQNTAVFQRL 409
               + +++ Q       A++N    + ++ E++H NT  FQ+L
Sbjct: 689 KANKSQIMIQQ-------AVSN----KNLIYEIRHVNTLDFQKL 721


>SB_41520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/72 (31%), Positives = 31/72 (43%)
 Frame = -1

Query: 623 YFHHPSPILSLGIFHQGYLCSSDIRTKMLLYV*ICHSYHFVSHPVSALYRYPCDVH*QMN 444
           +F    P ++ G+   G  C SD+ T +  ++  CH   FVS PVS     P      M 
Sbjct: 16  FFSLVLPCITYGLSVYG-ACDSDLTT-IQSFLDRCHKRRFVSTPVSIEKYSPSKTVSCMK 73

Query: 443 KTFSFCWKLYPA 408
           K   F   LY A
Sbjct: 74  KLQPFRTTLYVA 85


>SB_34002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 557 HLSINSLDGKFPKIILVTD 613
           HL+INSL  KF K++L+ +
Sbjct: 26  HLNINSLQNKFDKVLLMNE 44


>SB_31893| Best HMM Match : I-set (HMM E-Value=2e-22)
          Length = 767

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 298 CVTSNRCFGGRCFD*CYH 351
           CVT++ CFG    D CYH
Sbjct: 719 CVTTHVCFGDYANDCCYH 736


>SB_23835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
 Frame = +2

Query: 284 LDTNVVLHQIDV--LEEDALTNVIILQTV----LEEVKHQNTAVFQRLLDIISNKKRK 439
           LDT V    + +  LE D++  +  +       LEE +++N  +++  LD++S KKR+
Sbjct: 430 LDTQVRFKPLPIPALEPDSIGPIFGIHDATEEKLEEQRNRNRKLYKEQLDMVSQKKRE 487


>SB_21012| Best HMM Match : A_amylase_inhib (HMM E-Value=7.9)
          Length = 129

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 298 CVTSNRCFGGRCFD*CYH 351
           CVT++ CFG    D CYH
Sbjct: 81  CVTTHVCFGDYANDCCYH 98


>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
          Length = 963

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 635 QAFDYFHHPSPILSLGIFHQGYLCSS 558
           QA DY H+PSP+ S  I    Y  SS
Sbjct: 192 QAPDYLHYPSPVTSTYIQPSAYCDSS 217


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 191  CNTCPHKDDELVLETSPDSPCALF 262
            CNT P++ D   L+  PD PCA F
Sbjct: 1017 CNTTPNQPD---LKLVPDQPCAAF 1037


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,447,554
Number of Sequences: 59808
Number of extensions: 413948
Number of successful extensions: 1098
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)