Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19m15
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical pr... 69 3e-12
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 30 1.6
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 30 1.6
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr... 29 2.1
U22831-9|AAN63388.1| 412|Caenorhabditis elegans Hypothetical pr... 29 2.8
U22831-8|AAK20070.2| 545|Caenorhabditis elegans Hypothetical pr... 29 2.8
AC024090-1|AAF35424.2| 591|Caenorhabditis elegans Hypothetical ... 27 8.5
>Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical
protein C04G2.6 protein.
Length = 1029
Score = 68.9 bits (161), Expect = 3e-12
Identities = 43/175 (24%), Positives = 87/175 (49%), Gaps = 1/175 (0%)
Frame = +2
Query: 113 KTKRGNILKIVREHYLRDDLLCGSAACNTCPHKDDELVLETSPDSPCALFDFPHYLVLDT 292
+ + G + K E YLR+DL CG A C TC +L+ A H L++D+
Sbjct: 21 QNRSGKVYKRAEERYLRNDLSCGLAQCGTCKDFGTNPLLKIENPVRNAKVG-RHALIVDS 79
Query: 293 NVVLHQIDVLEEDALTNVIILQTVLEEVKHQNTAVFQRLLDI-ISNKKRKFYSFVNEHHK 469
++ D+ + L ++I+ QTV E VK + ++++ + + K +F+ F+NE H
Sbjct: 80 TSLIRFYDLFDSSLLRDLIVTQTVWEGVKAKAVPAYKKMNSLCYEDAKDRFHVFMNEFHC 139
Query: 470 DTYIERSPGEKQNDRNDRSIRKATSWYEYHLSINSLDGKFPKIILVTDDENNRKL 634
+T+ E S E + R + + + + H +++ ++LV D+++ +++
Sbjct: 140 ETFSESSKFEDLS-RGEELLLSTALYLKTHWQKHNV----APVVLVFDEDSKKRM 189
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
T10G3.5b protein.
Length = 1203
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 44 NISLSVEACFNTDEMWTTKT-FLTKTKRGNILKI-VREHYLRDDLLCGSAACNTCPHKDD 217
N SL ++A + W + T+ G + + VR+H+ R +CG CN C K
Sbjct: 1126 NQSLQIDADRYSSRKWLDDAEAINCTECGKVFSLTVRKHHCR---VCGKIYCNPCSSKSV 1182
Query: 218 ELVLETSPDSPC 253
+ +P C
Sbjct: 1183 RIASAKNPVRAC 1194
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
T10G3.5a protein.
Length = 1205
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 44 NISLSVEACFNTDEMWTTKT-FLTKTKRGNILKI-VREHYLRDDLLCGSAACNTCPHKDD 217
N SL ++A + W + T+ G + + VR+H+ R +CG CN C K
Sbjct: 1128 NQSLQIDADRYSSRKWLDDAEAINCTECGKVFSLTVRKHHCR---VCGKIYCNPCSSKSV 1184
Query: 218 ELVLETSPDSPC 253
+ +P C
Sbjct: 1185 RIASAKNPVRAC 1196
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 44 NISLSVEACFNTDEMWTTKT-FLTKTKRGNILKI-VREHYLRDDLLCGSAACNTCPHKDD 217
N SL ++A + W + T+ G + + VR+H+ R +CG CN C K
Sbjct: 1128 NQSLQIDADRYSSRKWLDDAEAINCTECGKVFSLTVRKHHCR---VCGKIYCNPCSSKSV 1184
Query: 218 ELVLETSPDSPC 253
+ +P C
Sbjct: 1185 RIASAKNPVRAC 1196
>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical
protein C27A7.4 protein.
Length = 1403
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 506 NDRNDRSIRKATSWYEYHLSINSLDGKFPKIILVTDD 616
N+ D S RKA + ++L+I S+D F I + D
Sbjct: 704 NENCDESTRKAMMDFSFYLTIGSMDAAFKAIQFIKSD 740
>U22831-9|AAN63388.1| 412|Caenorhabditis elegans Hypothetical
protein F47D12.9b protein.
Length = 412
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +2
Query: 38 ETNISLSVEACFNTDEMWTTKTFLTKTKRGNIL 136
+ +I +E+CF + + T ++FL +++ N+L
Sbjct: 213 QMSIGFGLESCFRVENLLTDRSFLMSSRKRNVL 245
>U22831-8|AAK20070.2| 545|Caenorhabditis elegans Hypothetical
protein F47D12.9a protein.
Length = 545
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +2
Query: 38 ETNISLSVEACFNTDEMWTTKTFLTKTKRGNIL 136
+ +I +E+CF + + T ++FL +++ N+L
Sbjct: 346 QMSIGFGLESCFRVENLLTDRSFLMSSRKRNVL 378
>AC024090-1|AAF35424.2| 591|Caenorhabditis elegans Hypothetical
protein C52E2.5 protein.
Length = 591
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = +2
Query: 356 QTVLEEVKHQNTAVFQRLLDI--ISNKKRKF---YSFVNEHHKDTYIERSPGEKQNDRND 520
+ V +VK + Q L++I IS R F YS +N+H + ++++ GE+Q +++
Sbjct: 203 EDVTLKVKRISADDIQTLVNICSISPSSRHFHIDYSCLNKHVTEQFLDKLYGEQQINKSG 262
Query: 521 RSIRKATSWYEY 556
+ +R + E+
Sbjct: 263 KLVRLIENKIEF 274
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,838,862
Number of Sequences: 27780
Number of extensions: 328431
Number of successful extensions: 953
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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