Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m15
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.81 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.5  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   5.7  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   7.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.6  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 370 GSETSKYCSFPEIAGYNFQQKEKVLFIC**TSQGYLYRALT 492
           G  +S  C   +  G   +Q+E++  +C   + GY Y ALT
Sbjct: 163 GYGSSDGCDARKKKGPTPRQQEELCLVCGDRASGYHYNALT 203


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 272 HYLVLDTNVVLHQIDVLEEDALTNVIILQTVLEEVKHQNTAVFQRLLDIISN 427
           HY +      L + DVL++   T  I+ +TVL  V+         L++   N
Sbjct: 461 HYHLYTNLTALRKRDVLKKGNFTIEILNKTVLAVVRQSEEEAVSLLINFSKN 512


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 232 DLSRFSMCFVRFPTLSSIGY*C 297
           D  RF+   +R P + SIG  C
Sbjct: 377 DAGRFAKLLLRLPAIRSIGLKC 398


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 232 DLSRFSMCFVRFPTLSSIGY*C 297
           D  RF+   +R P + SIG  C
Sbjct: 377 DAGRFAKLLLRLPAIRSIGLKC 398


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +3

Query: 153 ITCVTIYCADLQHVTHVHT 209
           + C  +YC+    +TH++T
Sbjct: 39  VICERVYCSRNSLMTHIYT 57


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 213 MMNWYWRPLPILHVLCSIS 269
           M+N Y    P L +LCSI+
Sbjct: 66  MINQYGGEQPTLRLLCSIA 84


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 440 TFSFCWKLYPAISGKLQY 387
           T+S  W++  AIS +++Y
Sbjct: 99  TYSGLWRVCVAISSRMEY 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,656
Number of Sequences: 438
Number of extensions: 3872
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)