Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m11
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              252   2e-67
SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)                    30   1.5  
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)                     29   4.5  
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)                      28   5.9  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   28   5.9  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  252 bits (617), Expect = 2e-67
 Identities = 120/198 (60%), Positives = 142/198 (71%)
 Frame = +3

Query: 27  RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 206
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 207 HSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDR 386
           HSRARVRK  EAR KGRH G GKR+GTANARMPQK +W                AKKID 
Sbjct: 86  HSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDN 145

Query: 387 HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXX 566
           H+YHSLYMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQ                   
Sbjct: 146 HMYHSLYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRM 205

Query: 567 XXXXXXLLQTFAREDEAA 620
                 +L  +A+E+EAA
Sbjct: 206 EQKRKDMLSAYAKEEEAA 223


>SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)
          Length = 400

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -2

Query: 308 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 141
           L++TR+ C SSL    VT  S  + V      G+Y  R   D  +   L  VL G+
Sbjct: 108 LYNTRVTCDSSLYNTRVTCDSRMYLVLLTVLPGLYNTRVTCDSRMYLVLLTVLPGL 163


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 213 RARVRKNTEARRKGRHCGFGKRRGTANAR 299
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)
          Length = 177

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -2

Query: 308 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 141
           L++TR+ C S L  A VT  S  + V      G+Y  R   D  +   +  VL G+
Sbjct: 68  LYNTRVTCGSRLYNARVTCDSRMYLVLLTVLQGLYNTRVTCDSRMYLVILTVLPGL 123


>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
          Length = 248

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -2

Query: 584 FLLLGGNTFLAALAC 540
           F L+GG TFLAALAC
Sbjct: 70  FALMGGLTFLAALAC 84


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 568 PPRRRNCCRPSLEKTKPRLPLRSK 639
           PP  +N  +P ++KTKP  PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,686,805
Number of Sequences: 59808
Number of extensions: 425764
Number of successful extensions: 1358
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)