Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m07
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)                   54   9e-08
SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   8e-05
SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   4.0  
SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_45652| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            27   9.2  

>SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)
          Length = 80

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 28/71 (39%), Positives = 43/71 (60%)
 Frame = +3

Query: 198 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 377
           ++ + +GTVKWFN + GYGFI    + +D+FVH  AI  +      +S+ +G+AV F   
Sbjct: 12  MSNRQNGTVKWFNDEKGYGFIT-PQSGDDLFVHFKAIQSD----GFKSLKEGQAVTFVAT 66

Query: 378 AGEKGFEAAGV 410
            G+KG +A  V
Sbjct: 67  RGQKGMQAEEV 77


>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +3

Query: 387 KGFEAAGVTGPGGEPVKGSPYAADKRRGYHR 479
           +G EA+ VTGP GEPV+GS YA D+RR  +R
Sbjct: 13  QGLEASNVTGPDGEPVQGSKYAPDRRRRNNR 43


>SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 309 ARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGG-EPVKGSPYAADKRRG 470
           AR    +AVR    GE    +V  G  G    G  G GG E V+G+PY  ++  G
Sbjct: 395 AREYLARAVREGLRGEEGSPSVFLGGGGRGGGGGDGGGGGEGVQGTPYTPEEEEG 449


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 111  RYQPWCNWRTAMVAKMVKYSTTSPRCS-PLFVVTSDKL 1
            R+ PW +WR+A   ++  Y   + RC+ P+ ++T  +L
Sbjct: 1887 RFHPW-SWRSAPAVRLELYGCLTDRCTMPMGLMTDRRL 1923


>SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 428 ASKRLTLCCRQAPWLPP 478
           AS   T+C RQAPWL P
Sbjct: 19  ASPTWTICLRQAPWLSP 35


>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 201 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVH 296
           AEK  G V   ++K  +GFI R D   ++F H
Sbjct: 201 AEKYQGVVS--SMKESFGFIERADKVSEIFFH 230


>SB_45652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 198 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGD 350
           +A+  +    +  VKSGY   +  DTK +V   Q A     P+   R+ GD
Sbjct: 60  MADGYTAFFSFSRVKSGYSVFSGKDTKAEVPSLQAAQHLPEPKGRKRTTGD 110


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 229 GSTSRVDMVSSTGMTPRKMCLCIRLPSPVTTHVRLCARSATERRWSLPWLP 381
           G++S +  VSST  +P +  +C  L  P    + LC    TE R  +P LP
Sbjct: 440 GTSSSIWDVSSTPRSPTRTPVCYALMIPFGHMLSLC--MDTEGRLRVPLLP 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,403,610
Number of Sequences: 59808
Number of extensions: 255654
Number of successful extensions: 765
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)