Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m07
         (619 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p pro...   166   2e-41
AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA...   166   2e-41
U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein ...   160   2e-39
AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p pro...    62   8e-10
AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding ...    62   8e-10
AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA...    62   8e-10
AY060441-1|AAL25480.1|  143|Drosophila melanogaster LD47312p pro...    32   0.54 
AE014296-2798|AAN11740.1|  143|Drosophila melanogaster CG9705-PB...    32   0.54 
AE014296-2797|AAF49414.1|  143|Drosophila melanogaster CG9705-PA...    32   0.54 
BT029040-1|ABJ16973.1|  460|Drosophila melanogaster IP03738p pro...    29   5.0  

>AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p
           protein.
          Length = 352

 Score =  166 bits (404), Expect = 2e-41
 Identities = 77/93 (82%), Positives = 84/93 (90%)
 Frame = +3

Query: 195 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 374
           VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116

Query: 375 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 473
           V GEKG EAA VTGP GEPV+GS +AADKRR +
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149


>AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA
           protein.
          Length = 352

 Score =  166 bits (404), Expect = 2e-41
 Identities = 77/93 (82%), Positives = 84/93 (90%)
 Frame = +3

Query: 195 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 374
           VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116

Query: 375 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 473
           V GEKG EAA VTGP GEPV+GS +AADKRR +
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149


>U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein
           protein.
          Length = 359

 Score =  160 bits (388), Expect = 2e-39
 Identities = 76/93 (81%), Positives = 83/93 (89%)
 Frame = +3

Query: 195 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 374
           VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIA NNP+KAVRSVGDGE VEF V
Sbjct: 58  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIA-NNPKKAVRSVGDGEVVEFDV 116

Query: 375 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 473
           V GEKG EAA VTGP GEPV+GS +AADKRR +
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149


>AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p
           protein.
          Length = 195

 Score = 61.7 bits (143), Expect = 8e-10
 Identities = 32/78 (41%), Positives = 43/78 (55%)
 Frame = +3

Query: 216 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 395
           G  KWFNV  G+GF+  ND  ++VFVHQ+ I  +      RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96

Query: 396 EAAGVTGPGGEPVKGSPY 449
           EA  V+   G   +GS Y
Sbjct: 97  EATRVSSRHGGSCQGSTY 114


>AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding
           protein LIN-28 protein.
          Length = 195

 Score = 61.7 bits (143), Expect = 8e-10
 Identities = 32/78 (41%), Positives = 43/78 (55%)
 Frame = +3

Query: 216 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 395
           G  KWFNV  G+GF+  ND  ++VFVHQ+ I  +      RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96

Query: 396 EAAGVTGPGGEPVKGSPY 449
           EA  V+   G   +GS Y
Sbjct: 97  EATRVSSRHGGSCQGSTY 114


>AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA
           protein.
          Length = 195

 Score = 61.7 bits (143), Expect = 8e-10
 Identities = 32/78 (41%), Positives = 43/78 (55%)
 Frame = +3

Query: 216 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 395
           G  KWFNV  G+GF+  ND  ++VFVHQ+ I  +      RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96

Query: 396 EAAGVTGPGGEPVKGSPY 449
           EA  V+   G   +GS Y
Sbjct: 97  EATRVSSRHGGSCQGSTY 114


>AY060441-1|AAL25480.1|  143|Drosophila melanogaster LD47312p
           protein.
          Length = 143

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 210 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 308
           V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55  VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>AE014296-2798|AAN11740.1|  143|Drosophila melanogaster CG9705-PB,
           isoform B protein.
          Length = 143

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 210 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 308
           V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55  VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>AE014296-2797|AAF49414.1|  143|Drosophila melanogaster CG9705-PA,
           isoform A protein.
          Length = 143

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 210 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 308
           V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55  VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>BT029040-1|ABJ16973.1|  460|Drosophila melanogaster IP03738p
           protein.
          Length = 460

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 306 IARNNPRKAVRSVGDGEAVEFAVVAGE-KGFEAAGVTGPGGEPVKGSPYAAD 458
           +AR  P        DG  V  AV+A +  G   AG T   G PV G+  AAD
Sbjct: 202 VARAVPATDGNGAPDGVPVAGAVLATDGNGAPVAGATDGNGAPVAGAVPAAD 253


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,363,794
Number of Sequences: 53049
Number of extensions: 377825
Number of successful extensions: 1369
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)