Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m06
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             171   3e-43
SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   3e-04
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)               35   0.054
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.16 
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   31   0.88 
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  27   8.2  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  171 bits (416), Expect = 3e-43
 Identities = 79/97 (81%), Positives = 90/97 (92%)
 Frame = +1

Query: 178 KLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 357
           K++EPILLLGKE+F  VDIRV VKGGGH +++YAIRQAISK+L+A+YQKYVDE SKKEI+
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70

Query: 358 DILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 468
           DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 71  DILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107


>SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 34/99 (34%), Positives = 48/99 (48%)
 Frame = +1

Query: 70  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 249
           G +K + A A+  +G G + VN RP      RL Q K Q        +     D    V 
Sbjct: 338 GYRKRSVAKAWVMKGSGKITVNDRPFVEYFSRL-QDKQQILFPFQVVDCVGQFDASCHVL 396

Query: 250 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 366
           GGG   Q  AIR AIS+AL+ F + ++ E  ++EI + L
Sbjct: 397 GGGLTGQAGAIRLAISRALLNFSEDHL-EPLQEEIPESL 434


>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
          Length = 391

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 29/80 (36%), Positives = 37/80 (46%)
 Frame = +1

Query: 229 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 408
           DI+V V GGG   Q  AI+  I++ALI F           ++K  L +     +  D R 
Sbjct: 323 DIKVNVHGGGESGQAGAIKHGITRALIDF---------NADLKPTLSK--AGFVTRDARE 371

Query: 409 CEPKKFGGPGARARYQKSYR 468
            E KK G   AR R Q S R
Sbjct: 372 VERKKCGLRKARRRKQFSKR 391


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 304 LIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 414
           ++AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 53  VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
 Frame = +1

Query: 247 KGGGHVAQ--VYAIRQAISKALIAFYQKYV-DEASKKEIKDILVQYDRSLLVADPRRCEP 417
           K GGH++Q  +  I Q   K L A + K + DE  K++ K+I V+ +RS +    ++ EP
Sbjct: 91  KLGGHLSQPKLKKITQVNKKKLRATHHKAILDEIMKEKAKEIDVKKERSTISRRGKKREP 150

Query: 418 K 420
           +
Sbjct: 151 E 151


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 255 WSCSTSLRYPTSYFK-GSDRLLPEICR 332
           WSCSTS+R  TS FK GS  LL  + R
Sbjct: 155 WSCSTSMRNRTSIFKAGSVPLLARLIR 181


>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 26  CRRQDVSPSRPSKYSDVRKPPPQLRIASVVMECCV*TGVHW 148
           C R+D+  +R   Y     P  Q +   +  E CV TG+ W
Sbjct: 228 CCRKDLQENRQCGYGARSVPTSQAKENGIFTEGCVKTGIAW 268


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 222 REFFLAEQKDRFLKFVLQQSGLNQ--VQWTP 136
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 186 LKFVLQQSGLNQVQWTPVYT 127
           LK     SG+N++ W PVYT
Sbjct: 198 LKIQAHTSGVNRLDWNPVYT 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,210,545
Number of Sequences: 59808
Number of extensions: 392928
Number of successful extensions: 917
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)