Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m06
         (570 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p pro...   276   1e-74
AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA...   276   1e-74
AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p pro...    51   1e-06
AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA ...    51   1e-06
BT030442-1|ABP87884.1|  820|Drosophila melanogaster FI01201p pro...    29   4.4  
BT011491-1|AAR99149.1|  820|Drosophila melanogaster GM05638p pro...    29   4.4  
BT001888-1|AAN71662.1|  206|Drosophila melanogaster SD14927p pro...    29   4.4  
AJ133756-1|CAB51359.1|  820|Drosophila melanogaster jim zinc fin...    29   4.4  
AE014296-3720|AAX52769.1|  820|Drosophila melanogaster CG11352-P...    29   4.4  
AE014296-3719|AAF51862.1|  820|Drosophila melanogaster CG11352-P...    29   4.4  
AE014296-3718|AAN12203.1|  820|Drosophila melanogaster CG11352-P...    29   4.4  
AY060784-1|AAL28332.1|  347|Drosophila melanogaster GH25366p pro...    29   5.8  
AF133269-1|AAD33042.1|  347|Drosophila melanogaster geranylgeran...    29   5.8  
AE014134-506|AAF51183.1|  347|Drosophila melanogaster CG18627-PA...    29   5.8  

>AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p
           protein.
          Length = 148

 Score =  276 bits (677), Expect = 1e-74
 Identities = 127/148 (85%), Positives = 142/148 (95%)
 Frame = +1

Query: 25  VQEARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLL 204
           +Q+ RREP+QAVQVFGRKKTATAVAYCKRG+G+L+VNGRPL+ +EP++LQYKLQEP+LLL
Sbjct: 1   MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLL 60

Query: 205 GKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRS 384
           GKEKF+ VDIRV V GGGHVAQ+YAIRQAISKAL+AFYQKYVDEASKKEIKDILVQYDR+
Sbjct: 61  GKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRT 120

Query: 385 LLVADPRRCEPKKFGGPGARARYQKSYR 468
           LLV DPRRCEPKKFGGPGARARYQKSYR
Sbjct: 121 LLVGDPRRCEPKKFGGPGARARYQKSYR 148


>AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA
           protein.
          Length = 148

 Score =  276 bits (677), Expect = 1e-74
 Identities = 127/148 (85%), Positives = 142/148 (95%)
 Frame = +1

Query: 25  VQEARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLL 204
           +Q+ RREP+QAVQVFGRKKTATAVAYCKRG+G+L+VNGRPL+ +EP++LQYKLQEP+LLL
Sbjct: 1   MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLL 60

Query: 205 GKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRS 384
           GKEKF+ VDIRV V GGGHVAQ+YAIRQAISKAL+AFYQKYVDEASKKEIKDILVQYDR+
Sbjct: 61  GKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRT 120

Query: 385 LLVADPRRCEPKKFGGPGARARYQKSYR 468
           LLV DPRRCEPKKFGGPGARARYQKSYR
Sbjct: 121 LLVGDPRRCEPKKFGGPGARARYQKSYR 148


>AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p
           protein.
          Length = 395

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
 Frame = +1

Query: 76  KKTATA-VAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKG 252
           +KTA A V     G G + +NG+ +   E    + +L  P+     E    VD+   V+G
Sbjct: 276 RKTARADVTVRLPGTGKISINGKDISYFEDENCREQLLFPLQF--SELLGKVDVEANVEG 333

Query: 253 GGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGG 432
           GG   Q  AIR  I+ +L +F  + + E+ +             LL  D RR E KKFG 
Sbjct: 334 GGPSGQAGAIRWGIAMSLRSFVDQEMIESMRL----------AGLLTRDYRRRERKKFGQ 383

Query: 433 PGARARY 453
            GAR +Y
Sbjct: 384 EGARRKY 390


>AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA
           protein.
          Length = 395

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
 Frame = +1

Query: 76  KKTATA-VAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKG 252
           +KTA A V     G G + +NG+ +   E    + +L  P+     E    VD+   V+G
Sbjct: 276 RKTARADVTVRLPGTGKISINGKDISYFEDENCREQLLFPLQF--SELLGKVDVEANVEG 333

Query: 253 GGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGG 432
           GG   Q  AIR  I+ +L +F  + + E+ +             LL  D RR E KKFG 
Sbjct: 334 GGPSGQAGAIRWGIAMSLRSFVDQEMIESMRL----------AGLLTRDYRRRERKKFGQ 383

Query: 433 PGARARY 453
            GAR +Y
Sbjct: 384 EGARRKY 390


>BT030442-1|ABP87884.1|  820|Drosophila melanogaster FI01201p
           protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 225 GRHQSDSQGWWSCSTSLRYPTSYFKG--SDRLLPEI 326
           G H  DSQG    S  + YP SYFK     ++LPE+
Sbjct: 476 GYHDEDSQGTPDGSGGMHYP-SYFKDGKGQKILPEV 510


>BT011491-1|AAR99149.1|  820|Drosophila melanogaster GM05638p
           protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 225 GRHQSDSQGWWSCSTSLRYPTSYFKG--SDRLLPEI 326
           G H  DSQG    S  + YP SYFK     ++LPE+
Sbjct: 476 GYHDEDSQGTPDGSGGMHYP-SYFKDGKGQKILPEV 510


>BT001888-1|AAN71662.1|  206|Drosophila melanogaster SD14927p
           protein.
          Length = 206

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 225 GRHQSDSQGWWSCSTSLRYPTSYFKG--SDRLLPEI 326
           G H  DSQG    S  + YP SYFK     ++LPE+
Sbjct: 41  GYHDEDSQGTPDGSGGMHYP-SYFKDGKGQKILPEV 75


>AJ133756-1|CAB51359.1|  820|Drosophila melanogaster jim zinc finger
           protein protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 225 GRHQSDSQGWWSCSTSLRYPTSYFKG--SDRLLPEI 326
           G H  DSQG    S  + YP SYFK     ++LPE+
Sbjct: 476 GYHDEDSQGTPDGSGGMHYP-SYFKDGKGQKILPEV 510


>AE014296-3720|AAX52769.1|  820|Drosophila melanogaster CG11352-PD,
           isoform D protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 225 GRHQSDSQGWWSCSTSLRYPTSYFKG--SDRLLPEI 326
           G H  DSQG    S  + YP SYFK     ++LPE+
Sbjct: 476 GYHDEDSQGTPDGSGGMHYP-SYFKDGKGQKILPEV 510


>AE014296-3719|AAF51862.1|  820|Drosophila melanogaster CG11352-PC,
           isoform C protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 225 GRHQSDSQGWWSCSTSLRYPTSYFKG--SDRLLPEI 326
           G H  DSQG    S  + YP SYFK     ++LPE+
Sbjct: 476 GYHDEDSQGTPDGSGGMHYP-SYFKDGKGQKILPEV 510


>AE014296-3718|AAN12203.1|  820|Drosophila melanogaster CG11352-PB,
           isoform B protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 225 GRHQSDSQGWWSCSTSLRYPTSYFKG--SDRLLPEI 326
           G H  DSQG    S  + YP SYFK     ++LPE+
Sbjct: 476 GYHDEDSQGTPDGSGGMHYP-SYFKDGKGQKILPEV 510


>AY060784-1|AAL28332.1|  347|Drosophila melanogaster GH25366p
           protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 240 DSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 329
           D  GWW C   L  P+    G    LP++C
Sbjct: 227 DKLGWWLCERQL--PSGGLNGRPEKLPDVC 254


>AF133269-1|AAD33042.1|  347|Drosophila melanogaster geranylgeranyl
           transferase typeII beta-subunit protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 240 DSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 329
           D  GWW C   L  P+    G    LP++C
Sbjct: 227 DKLGWWLCERQL--PSGGLNGRPEKLPDVC 254


>AE014134-506|AAF51183.1|  347|Drosophila melanogaster CG18627-PA
           protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 240 DSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 329
           D  GWW C   L  P+    G    LP++C
Sbjct: 227 DKLGWWLCERQL--PSGGLNGRPEKLPDVC 254


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,986,843
Number of Sequences: 53049
Number of extensions: 578157
Number of successful extensions: 1554
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2234671092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)