Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m05
         (324 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing...    34   0.70 
UniRef50_A3Q486 Cluster: Transcriptional regulator, TetR family;...    32   2.1  
UniRef50_A4R449 Cluster: Putative uncharacterized protein; n=1; ...    32   2.1  
UniRef50_Q6FB37 Cluster: Putative transcriptional regulator; n=1...    31   3.7  
UniRef50_UPI000038295C Cluster: hypothetical protein Magn0300173...    31   4.9  
UniRef50_A6VU03 Cluster: Phosphonate ABC transporter, periplasmi...    31   4.9  
UniRef50_UPI0000DD7C16 Cluster: PREDICTED: hypothetical protein;...    31   6.5  
UniRef50_UPI000038C572 Cluster: COG2319: FOG: WD40 repeat; n=1; ...    30   8.6  
UniRef50_Q52UN7 Cluster: Major capsid protein; n=6; Unassigned H...    30   8.6  
UniRef50_A7IQE2 Cluster: Putative phenylacetate-CoA ligase; n=1;...    30   8.6  
UniRef50_A0YMU1 Cluster: Penicillin-binding protein 1A; n=2; Osc...    30   8.6  
UniRef50_A0EFF6 Cluster: Chromosome undetermined scaffold_93, wh...    30   8.6  
UniRef50_Q5BH63 Cluster: Survival factor 1; n=18; Pezizomycotina...    30   8.6  

>UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing
           protein 13B.; n=1; Takifugu rubripes|Rep: Ankyrin repeat
           domain-containing protein 13B. - Takifugu rubripes
          Length = 634

 Score = 33.9 bits (74), Expect = 0.70
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 72  PSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASL 185
           PSC F  PP  TVL    R  L++++  LL  +IQ SL
Sbjct: 506 PSCVFEVPPGYTVLGSKQRDTLREDEEDLLQFAIQQSL 543


>UniRef50_A3Q486 Cluster: Transcriptional regulator, TetR family;
           n=1; Mycobacterium sp. JLS|Rep: Transcriptional
           regulator, TetR family - Mycobacterium sp. (strain JLS)
          Length = 236

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 90  TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSF 245
           TP   TVL+D I  VLKD+ TA+LS S+        I R  V    + S+ +
Sbjct: 155 TPKLSTVLHDAIEPVLKDS-TAVLSGSVTLDEVVDLIVRMAVSHYFMPSNDY 205


>UniRef50_A4R449 Cluster: Putative uncharacterized protein; n=1;
            Magnaporthe grisea|Rep: Putative uncharacterized protein
            - Magnaporthe grisea (Rice blast fungus) (Pyricularia
            grisea)
          Length = 4052

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +3

Query: 111  LYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVKS*SLILHSFG 290
            LY  +     + +T  L   + ASLPS +++  L+   H++ DSF + +    L+    G
Sbjct: 2664 LYHELHHAQFNLETGELVKMVLASLPSGQVHHLLIGYHHINMDSFSMAILMSELLQLYAG 2723

Query: 291  LLVSSRS 311
             ++  R+
Sbjct: 2724 TVLEPRT 2730


>UniRef50_Q6FB37 Cluster: Putative transcriptional regulator; n=1;
           Acinetobacter sp. ADP1|Rep: Putative transcriptional
           regulator - Acinetobacter sp. (strain ADP1)
          Length = 466

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +3

Query: 60  YVFDPSCYFSTPPFDTVLYD-----NIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSR 224
           Y  D  C F   P DTVL D     N R +LK ++  ++S       P  E ++Q +   
Sbjct: 175 YSIDLICRFLLKPGDTVLLDDPCYFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEH 234

Query: 225 H 227
           H
Sbjct: 235 H 235


>UniRef50_UPI000038295C Cluster: hypothetical protein Magn03001734;
           n=1; Magnetospirillum magnetotacticum MS-1|Rep:
           hypothetical protein Magn03001734 - Magnetospirillum
           magnetotacticum MS-1
          Length = 101

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 263 RFYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKS 153
           R +   KG+GR ++R  Q+A DLG R   L R ++++
Sbjct: 16  RLWRSVKGLGRELSRASQVAGDLGARADELARAQQEA 52


>UniRef50_A6VU03 Cluster: Phosphonate ABC transporter, periplasmic
           phosphonate-binding protein precursor; n=23;
           Proteobacteria|Rep: Phosphonate ABC transporter,
           periplasmic phosphonate-binding protein precursor -
           Marinomonas sp. MWYL1
          Length = 347

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 156 LLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVKS*SLILHSFG 290
           +LS    A+  +S++++++VD++ VS D F +   S      SFG
Sbjct: 214 VLSGDYDAAPVASDVFKRMVDAKRVSKDDFRIIYTSPRFPTSSFG 258


>UniRef50_UPI0000DD7C16 Cluster: PREDICTED: hypothetical protein;
           n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 223

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 52  PESTSSIPPATFQLLPSIPYCTTTS 126
           P   S+ PP +F L+PS+P C+ TS
Sbjct: 75  PLRPSACPPLSFSLVPSLPPCSPTS 99


>UniRef50_UPI000038C572 Cluster: COG2319: FOG: WD40 repeat; n=1;
           Nostoc punctiforme PCC 73102|Rep: COG2319: FOG: WD40
           repeat - Nostoc punctiforme PCC 73102
          Length = 1218

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = +3

Query: 108 VLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 233
           V++DNI T+L+ N+ +  S+ I+      EI+RQ+ + RH S
Sbjct: 230 VIFDNIETILQHNEKS-KSSYIKGYEYYGEIFRQIGEIRHQS 270


>UniRef50_Q52UN7 Cluster: Major capsid protein; n=6; Unassigned
            Herpesviridae|Rep: Major capsid protein - Cyprinid
            herpesvirus 1
          Length = 1269

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 290  PKTVKNKGLRFYVDSKGVGRNMARIYQLAVDLGGRERSLNRCR 162
            P +  +K   FYVD+  +G N  ++ +  V++  R   L  CR
Sbjct: 1173 PHSFNSKSSMFYVDNSTIGANSDQLLKSPVNMDNRNNFLLMCR 1215


>UniRef50_A7IQE2 Cluster: Putative phenylacetate-CoA ligase; n=1;
           Xanthobacter autotrophicus Py2|Rep: Putative
           phenylacetate-CoA ligase - Xanthobacter sp. (strain Py2)
          Length = 416

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 66  FDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 233
           +  +CY  TP F  +L D    + K  +T        A+LPSS   R L+ +R VS
Sbjct: 178 YGATCYLGTPDFLKLLLDRAAELGKSTRTLTKGFVSGAALPSS--LRALLSARGVS 231


>UniRef50_A0YMU1 Cluster: Penicillin-binding protein 1A; n=2;
           Oscillatoriales|Rep: Penicillin-binding protein 1A -
           Lyngbya sp. PCC 8106
          Length = 855

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +3

Query: 105 TVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGV 251
           TV  D  R++++  + ALL+  I+  +   +I  Q ++  ++ S ++GV
Sbjct: 283 TVFLDQERSIVRKLREALLATKIERQMSKEDILEQYLNLVYLGSGAYGV 331


>UniRef50_A0EFF6 Cluster: Chromosome undetermined scaffold_93, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_93,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 184

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 23/79 (29%), Positives = 39/79 (49%)
 Frame = +3

Query: 57  VYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSS 236
           +Y     C FS   +D + Y N+R+ ++    A+L  +I+ SL  S+   Q++DS  +  
Sbjct: 21  IYSTQQKCRFSRNEYDFLYYINLRSKVQQILEAILK-NIKTSLKMSQ--NQILDSDSILG 77

Query: 237 DSFGVYVKS*SLILHSFGL 293
            S   Y K   L++  F L
Sbjct: 78  -STNSYDKCFYLLVQEFAL 95


>UniRef50_Q5BH63 Cluster: Survival factor 1; n=18;
           Pezizomycotina|Rep: Survival factor 1 - Emericella
           nidulans (Aspergillus nidulans)
          Length = 546

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +3

Query: 111 LYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVKS*SLILHSFG 290
           +YD IR VLK+    +       ++PSSE  R+LV +R V      VY     L  H FG
Sbjct: 495 IYDEIRIVLKERLAEVCLVMESGTIPSSE--RKLVTTRDV------VYALKRMLTTHPFG 546


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,931,002
Number of Sequences: 1657284
Number of extensions: 5139977
Number of successful extensions: 15389
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15386
length of database: 575,637,011
effective HSP length: 84
effective length of database: 436,425,155
effective search space used: 10037778565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)