Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19m05
(324 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07) 28 1.5
SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14) 27 4.6
SB_33544| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 26 6.1
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06) 26 6.1
SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 26 6.1
SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
SB_45760| Best HMM Match : Drf_FH1 (HMM E-Value=3.6) 26 8.1
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
Length = 592
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 99 FDTVLYDNIRTVLK---DNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVK 260
FDT+ +R + DN+ L I+ SS++ R V +R + SD VYVK
Sbjct: 349 FDTIAPSTVRPKTREMTDNQVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405
>SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 233 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQ 111
R+MA+ + + L GR R RE++ VLK P VV +
Sbjct: 30 RSMAQSFLSGISLDGRIMREPRTRERNDEKVLKPTPTVVTE 70
>SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 58 STSSIPPATFQLLPSIPYCTTTSGR 132
+T SIP A PS+PY TT R
Sbjct: 323 TTGSIPTAITSSEPSVPYSTTRDSR 347
>SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 892
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 264 KILRRLQRSRKKHGENLPTGGRSRRKG-EKLE 172
K LR+ Q ++ K + P GGRS R EKL+
Sbjct: 713 KALRKAQETKGKLADGKPVGGRSGRPAIEKLQ 744
>SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)
Length = 1083
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 69 DPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSA 167
D Y P D V +N+ TVL DNK L++
Sbjct: 309 DLKWYVFDGPVDAVWIENMNTVLDDNKKLCLTS 341
>SB_33544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -2
Query: 290 PKTV---KNKGLRFYVDSKGVGRNMARI 216
PKT+ KNKGL ++SKG+G R+
Sbjct: 173 PKTLDLLKNKGLTLNMESKGIGPTEYRV 200
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -2
Query: 188 RERSLNRCREKSSFVVL---KNRPDVVVQYGIEGRS*KVAGGIEDVD 57
R RS RCR KSS + K++ + + +Y ++ VAG VD
Sbjct: 364 RSRSRRRCRSKSSSIASSPDKSKDEDMSKYMLDASDKPVAGAKPTVD 410
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 96 PFDTVLYDNIRTVLKDNKTALLS 164
P D + +N+ +VL DNKT L+
Sbjct: 2286 PVDAIWIENLNSVLDDNKTLTLA 2308
>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
Length = 1532
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 96 PFDTVLYDNIRTVLKDNKTALLS 164
P D + +N+ +VL DNKT L+
Sbjct: 1384 PVDAIWIENLNSVLDDNKTLTLA 1406
>SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 33 VSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTV 134
+S +IGT V++ + Y PP +VL D R V
Sbjct: 232 ISMMIGTVVFMTGRNWYVVRPPGGSVLTDTYRVV 265
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 96 PFDTVLYDNIRTVLKDNKTALLS 164
P D + +N+ +VL DNKT L+
Sbjct: 2292 PVDAIWIENLNSVLDDNKTLTLA 2314
>SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 272 KGLRFYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 117
+G F V S VG+N ++ G L R EK ++++K PD+V
Sbjct: 222 QGTVFKVMSMNVGKNKKEVHAKDDQKGKGPAELRR--EKVVYLLIKEEPDLV 271
>SB_45760| Best HMM Match : Drf_FH1 (HMM E-Value=3.6)
Length = 173
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 61 TSSIPPATFQLLPSIPYCTTT 123
+S+IP TF +IPYCT T
Sbjct: 52 SSTIPYCTFTGSSTIPYCTIT 72
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 61 TSSIPPATFQLLPSIPYCTTT 123
+S+IP TF +IPYCT T
Sbjct: 85 SSTIPYCTFTGSSTIPYCTIT 105
>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +3
Query: 6 VTHKELALKVSSIIGTRVYVFDPSCYFST----PPFDTVLYDNIRTVLKDNKTALLS 164
+T EL L++ S + T+ YF PPF+ V D + +++KD + L S
Sbjct: 670 LTEAELFLELGSTLKTKKRKKTSKPYFMKFQRDPPFNLVNTDTLDSIIKDTEEILES 726
>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 194 RDLPPVGRFSPCFFRLLWSLRKILIPYSSQ 283
RDLPP+ F+P + +L ILIP +Q
Sbjct: 360 RDLPPLFNFTPQELSVKPALNTILIPPHAQ 389
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,110,648
Number of Sequences: 59808
Number of extensions: 159728
Number of successful extensions: 455
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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