Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m05
         (324 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47590.1 68416.m05181 esterase/lipase/thioesterase family pro...    30   0.31 
At4g29990.1 68417.m04266 light repressible receptor protein kina...    29   0.71 
At4g20200.1 68417.m02953 terpene synthase/cyclase family protein...    28   1.6  
At4g39820.1 68417.m05641 expressed protein                             27   2.2  
At1g51890.1 68414.m05849 leucine-rich repeat protein kinase, put...    27   2.2  
At4g08685.1 68417.m01430 pollen Ole e 1 allergen and extensin fa...    27   2.9  
At2g09840.1 68415.m01018 hypothetical protein                          27   2.9  
At1g30170.1 68414.m03688 hypothetical protein contains Pfam prof...    26   5.0  
At5g28350.2 68418.m03443 expressed protein                             26   6.7  
At5g28350.1 68418.m03442 expressed protein                             26   6.7  
At4g30870.1 68417.m04383 repair endonuclease family protein cont...    26   6.7  
At1g64900.1 68414.m07357 cytochrome P450, putative similar to cy...    26   6.7  
At3g17240.2 68416.m02204 dihydrolipoamide dehydrogenase 2, mitoc...    25   8.8  

>At3g47590.1 68416.m05181 esterase/lipase/thioesterase family
           protein low similarity to cinnamoyl ester hydrolase CinI
           [Butyrivibrio fibrisolvens] GI:1622732; contains
           Interpro entry IPR000379
          Length = 309

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 60  YVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQ--LVDSRH 227
           +V   S Y+ T PF T  + N+R  +K+N+ +   A      PS  I  Q  ++ +RH
Sbjct: 10  FVPQDSPYYKTSPFPTSSFFNVRFPIKNNQISCNKAKNLRMDPSKGIQEQRIVIPNRH 67


>At4g29990.1 68417.m04266 light repressible receptor protein kinase
           identical to light repressible receptor protein kinase
           [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 876

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 42  IIGTRVYVFDPSCYFSTPPFDTVLYDNI-RTVLKDNKTALLSASIQASLPSSEIYRQLVD 218
           +I TR    +   +  TP FD  +  N+  +V+  N+TA+++  I  + PS  I+  LVD
Sbjct: 104 LIRTRFMYGNYDGFSKTPEFDLYIGANLWESVVLINETAIMTKEIIYTPPSDHIHVCLVD 163


>At4g20200.1 68417.m02953 terpene synthase/cyclase family protein
           5-epi-aristolochene synthase, Nicotiana tabacum,
           PATX:G505588
          Length = 604

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -2

Query: 197 LGGRERSLNRCREKSSFVVLKNRPDVVVQYGIEGRS*KVAGGIEDVDSGAY 45
           L G   S+ +   K +F  LK+RP +V    I+GR      G ED  S  Y
Sbjct: 464 LAGIFMSMGKMATKEAFEWLKSRPKLVQYLSIKGRLMNDLMGYEDDMSRGY 514


>At4g39820.1 68417.m05641 expressed protein 
          Length = 408

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 239 VGRNMARIYQLAVDLGGRERSLNRC--REKSSFVVLKNR 129
           VGRN A +Y +A D     R  ++C  R+ S  + + N+
Sbjct: 296 VGRNKALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNK 334


>At1g51890.1 68414.m05849 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 888

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 81  YFS-TPPF---DTVLYDNIRTVLKDNKTALLSASIQASLPSSEIY 203
           YFS TPPF   D  ++D I     DNK +LLS  +  S+ +S  Y
Sbjct: 194 YFSPTPPFLRYDEDVHDRIWIPFLDNKNSLLSTEL--SVDTSNFY 236


>At4g08685.1 68417.m01430 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 159

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 42  IIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDS 221
           ++  RVY       F TP    +    +R   KD +T  L+ S +A   S+  Y+ LV+ 
Sbjct: 28  VVRGRVYCDTCLAGFETPASTYISGAVVRLECKDRRTMELTYSHEARTDSTGSYKILVNE 87

Query: 222 RH 227
            H
Sbjct: 88  DH 89


>At2g09840.1 68415.m01018 hypothetical protein
          Length = 163

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 15  KELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNI 125
           +ELALK   I+   VYV  P+   +TP F    Y +I
Sbjct: 20  QELALKGHEIVMVHVYVSVPTSSSATPSFALNPYSSI 56


>At1g30170.1 68414.m03688 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 366

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 182 SPFLRDLPPVGRFSPCFFRLLWSLRKILIPYSSQFWVVSFIAL 310
           +P L  LPP+     C   ++W++     P   + WVV   +L
Sbjct: 107 NPKLLTLPPLNPLFSCQTDVIWNVAMSSCPDDDEDWVVGIKSL 149


>At5g28350.2 68418.m03443 expressed protein
          Length = 1087

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 75  SCYFSTPPFDTVLYDNIRTVLK--DNKTALLSASIQASLP 188
           +C+  TP   T+L+  +R +L+   N+ ALL A + A  P
Sbjct: 707 ACFEPTPQAQTILHCLLRHLLQRDKNEEALLLAQLSAEKP 746


>At5g28350.1 68418.m03442 expressed protein
          Length = 1127

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 75  SCYFSTPPFDTVLYDNIRTVLK--DNKTALLSASIQASLP 188
           +C+  TP   T+L+  +R +L+   N+ ALL A + A  P
Sbjct: 747 ACFEPTPQAQTILHCLLRHLLQRDKNEEALLLAQLSAEKP 786


>At4g30870.1 68417.m04383 repair endonuclease family protein
           contains Pfam PF02732 : ERCC4 domain; similar to repair
           endonuclease (TIGR:At5g41150) [Arabidopsis thaliana]
          Length = 661

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 141 DNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVY 254
           D   + L  S+   L  +E+Y    DSR+   DS G +
Sbjct: 252 DKDPSTLWLSVMCHLRQAEVYNSCPDSRNSKKDSSGPF 289


>At1g64900.1 68414.m07357 cytochrome P450, putative similar to
           cytochrome p450 GI:438240 from [Solanum melongena]
          Length = 506

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 144 NKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFG 248
           ++  +L+ ++ A  P   +  ++VD  ++SS S+G
Sbjct: 88  HEALVLNGAVYADRPPPAVISKIVDEHNISSGSYG 122


>At3g17240.2 68416.m02204 dihydrolipoamide dehydrogenase 2,
           mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
           nearly identical to GB:AAF34796 [gi:6984216] from
           [Arabidopsis thaliana]; alternative splice form exists
          Length = 127

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 215 RFSPCFFRLLWSL 253
           +FSP F RLLW+L
Sbjct: 106 KFSPIFIRLLWNL 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,546,909
Number of Sequences: 28952
Number of extensions: 120359
Number of successful extensions: 327
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)