Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m01
         (347 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        20   6.3  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    20   6.3  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 345 LGLLVQVAYPTSTSHKIYPST 283
           L L   +A+    SH IYPS+
Sbjct: 336 LPLTHNIAHNPYPSHSIYPSS 356


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 266 FFEFVSPVKTILEPLFQCFNHTFAYFVFVSR*QTRELYLLGN 141
           F   V+ +   L  L Q  N+   Y+V ++   T  L ++GN
Sbjct: 111 FVNNVAALDETLAKLGQYINYETDYYVCLAMTITGPLVIIGN 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,502
Number of Sequences: 336
Number of extensions: 1115
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)