Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19m01
(347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 58 4e-10
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 26 1.5
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 26 1.9
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 3.4
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 3.4
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 4.4
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 24 5.9
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 24 7.8
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 24 7.8
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 7.8
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c... 24 7.8
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 58.0 bits (134), Expect = 4e-10
Identities = 23/63 (36%), Positives = 43/63 (68%)
Frame = +3
Query: 159 FARLLSGNENKVRERVIKTLKKWLQNCFHRGYEFKEXDFTRVWKGIFYAMWMSDKPLVXE 338
F + L+ N+ K R++ +++L+++L + +F+ DF ++WKG+FY MWM+DKPL +
Sbjct: 7 FIKKLAANDRKTRDKALESLQRFLS----QKKKFERLDFLKLWKGLFYCMWMADKPLYQQ 62
Query: 339 DLA 347
L+
Sbjct: 63 KLS 65
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 1.5
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 174 SGNENKVRERVIKTLKKWLQNCFHRGYEFKEXDFTRVWKGIFYAMWMSDKP 326
+G+E+KV ++V + + + CF + +E +E T + I Y+ S P
Sbjct: 99 TGHESKVSDQVKQVISTPMSTCFEQWFEGEEQSSTGNNQDISYSSVNSLSP 149
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 1.9
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 340 SSXTSGLSDIHIA*NIPFH 284
SS +SG SD+HIA N FH
Sbjct: 399 SSASSGGSDVHIAFNYWFH 417
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 195 RERVIKTLKKWLQNCFHRGYEFKEXDFTRV 284
RE +KT K+ L NC H +++ ++ V
Sbjct: 1463 RELQLKTAKEILSNCKHLDFDYVNGEWATV 1492
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 147 QEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE 257
Q + F+ LLS + VR+ +++ + CFH Y+
Sbjct: 43 QTLSFSLLLSNTIHDVRQVILELMLAPPHTCFHLEYK 79
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 24.6 bits (51), Expect = 4.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 183 ENKVRERVIKTLKKWLQNCFHR-GYEFKEXDFTR 281
EN+ + IK + WLQN +R + + DF R
Sbjct: 296 ENEAHQYEIKGYRLWLQNILNRENCQITKLDFER 329
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 24.2 bits (50), Expect = 5.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 290 LPHSREIXFFEFVSPVKTILEPL 222
+P R F+FVSP+KT+ L
Sbjct: 131 IPDVRSQLGFDFVSPIKTVYNVL 153
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 23.8 bits (49), Expect = 7.8
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 138 VVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYEF 260
++A + +++ E +R+R I+TL + ++N F+R F
Sbjct: 610 IIAGTVLSTTVVAAAEILLRQRGIRTLPETVRNHFYRSTMF 650
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 23.8 bits (49), Expect = 7.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 336 LVQVAYPTSTSHKIYPSTL 280
L+ + +ST HK+YPS L
Sbjct: 188 LISILSSSSTLHKLYPSGL 206
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 23.8 bits (49), Expect = 7.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -1
Query: 329 KWLIRHPHRIK 297
K L+RHPHR+K
Sbjct: 149 KSLVRHPHRLK 159
>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 298
Score = 23.8 bits (49), Expect = 7.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 275 HESVEGYILCDVD 313
HE VE ILCD+D
Sbjct: 109 HECVEEAILCDID 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,230,450
Number of Sequences: 5004
Number of extensions: 18391
Number of successful extensions: 62
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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