Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m01
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    40   5e-04
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57...    27   3.1  
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169...    27   4.0  
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240...    26   7.1  
04_04_1129 - 31107892-31110246                                         26   9.3  

>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +3

Query: 144 AQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYEFKEXDFTRVWKGIFYAMWMSDK 323
           A+    AR L+      RER ++ L                 D  ++WKG+F+  W SDK
Sbjct: 11  AEAAAIARRLASCNGSARERAVRHLLSTFLPA--SAPHLSASDLLKLWKGLFFCFWHSDK 68

Query: 324 PLVXEDLA 347
           PL    LA
Sbjct: 69  PLYQSSLA 76


>08_01_0081 -
           574119-575204,575794-576191,576321-576382,576581-576653,
           576754-576824,576961-577148,577230-577377,577465-577503,
           577601-577656,577745-577798,577900-578003,578117-578217,
           578726-578796,578912-578968,579306-579422,579653-579682
          Length = 884

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 117 TKKEQVAVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCF 242
           T  + +A+V   IK   L   +  K    V   LKKW+ NC+
Sbjct: 42  TLNDMMAIVPLMIKMLGLNLKDNAKGLASVYDPLKKWMDNCY 83


>03_04_0058 -
           16915281-16915313,16915424-16915535,16915585-16916990,
           16919112-16919282
          Length = 573

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 135 AVVAQEIKFARLLSGNENK-VRERVIKTLKKWLQNCFHRGYEFKEXDFTR-VWKGIFYAM 308
           A V Q  +F +L + +  K +    +K   +WLQN  HRG   +  + TR V   +++  
Sbjct: 180 AAVVQTAEFGQLAAESVPKNLHCLTVKLTVEWLQNPKHRGRSEEHRNSTRLVDNNLYHFA 239

Query: 309 WMSDKPL 329
             SD  L
Sbjct: 240 IFSDNVL 246


>07_03_1764 +
           29322683-29323387,29323809-29323889,29323968-29324072,
           29324453-29325382,29326728-29326856,29326953-29327042,
           29327237-29327293,29327362-29327394
          Length = 709

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 207 IKTLKKWLQNCFHRGYEFKEXDFTRVWKGIFYAMWMSD 320
           +K L ++L+NC     +FKE +F  +    FY   M D
Sbjct: 564 VKDLLRFLRNCRRHAAQFKEDEFPSI-VDHFYPKLMCD 600


>04_04_1129 - 31107892-31110246
          Length = 784

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 323 LIRHPHRIKYTLPHSREIXFFEFVSPVKTILEPLFQCF 210
           L R+P   ++  P  R    F   SP   +LEP F CF
Sbjct: 176 LRRYPRPPRHPPPSPRPSTPFSPRSPPMALLEPAFFCF 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,794,595
Number of Sequences: 37544
Number of extensions: 107058
Number of successful extensions: 231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)