Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m01
         (347 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.26 
SB_49408| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_57323| Best HMM Match : ShTK (HMM E-Value=0)                        27   5.5  
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_42454| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  

>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 129 QVAVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFH 245
           Q   + + I  A L+S  +N V +  +K+L+KW+  CF+
Sbjct: 316 QTHSLPKSIPSAILISTAQNHVLDSPVKSLRKWVDGCFY 354


>SB_49408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 345 LGLLVQVAYPTSTSHKIYPSTL 280
           LG  V +AY T+  HKIYP  L
Sbjct: 16  LGPAVLIAYYTNDLHKIYPDVL 37


>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
          Length = 911

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 332 YKWLIRHPHRIKYTLPHS 279
           Y WL   PH   YT PH+
Sbjct: 491 YAWLYTRPHACLYTRPHA 508


>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1265

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 117 TKKEQVAVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNC 239
           T KEQ   + +EI+ +R L      V++     LKK L NC
Sbjct: 673 TAKEQSIDLRKEIERSRSLKREREDVKQEQDSPLKKRLGNC 713


>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 183 ENKVRERVIKTLKKWLQNCFHRGYEFKEXD 272
           ENK R + +KT K ++Q C     + KE D
Sbjct: 193 ENKKRFKQVKTFKDYVQLCLKGATKDKEED 222


>SB_42454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 332 YKWLIR-HPHRIKYTLPHSREI 270
           Y W++R  P +  YTLPH R I
Sbjct: 35  YLWIMRITPKKPNYTLPHKRVI 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,303,381
Number of Sequences: 59808
Number of extensions: 143269
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)