Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19m01
(347 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U79775-1|AAC51625.1| 461|Homo sapiens NNP-1/Nop52 protein. 63 2e-10
BC014787-1|AAH14787.2| 466|Homo sapiens RRP1 protein protein. 63 2e-10
BC000380-1|AAH00380.1| 461|Homo sapiens ribosomal RNA processin... 63 2e-10
AP001752-4|BAA95542.1| 461|Homo sapiens NNP-1/Nop52 (NNP-1), no... 63 2e-10
AK223215-1|BAD96935.1| 461|Homo sapiens nucleolar protein NOP52... 63 2e-10
AK223185-1|BAD96905.1| 461|Homo sapiens nucleolar protein NOP52... 63 2e-10
BC028386-1|AAH28386.1| 758|Homo sapiens ribosomal RNA processin... 61 8e-10
BC014005-1|AAH14005.1| 408|Homo sapiens RRP1B protein protein. 61 8e-10
>U79775-1|AAC51625.1| 461|Homo sapiens NNP-1/Nop52 protein.
Length = 461
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +3
Query: 150 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEXDFTRVWKGIFYAMWMSDKP 326
EI+ A+ L+GNE R+R ++ L+K++ R F + +VWKG+FY MWM DKP
Sbjct: 10 EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69
Query: 327 LVXEDL 344
L+ E+L
Sbjct: 70 LLQEEL 75
>BC014787-1|AAH14787.2| 466|Homo sapiens RRP1 protein protein.
Length = 466
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +3
Query: 150 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEXDFTRVWKGIFYAMWMSDKP 326
EI+ A+ L+GNE R+R ++ L+K++ R F + +VWKG+FY MWM DKP
Sbjct: 15 EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 74
Query: 327 LVXEDL 344
L+ E+L
Sbjct: 75 LLQEEL 80
>BC000380-1|AAH00380.1| 461|Homo sapiens ribosomal RNA processing 1
homolog (S. cerevisiae) protein.
Length = 461
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +3
Query: 150 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEXDFTRVWKGIFYAMWMSDKP 326
EI+ A+ L+GNE R+R ++ L+K++ R F + +VWKG+FY MWM DKP
Sbjct: 10 EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69
Query: 327 LVXEDL 344
L+ E+L
Sbjct: 70 LLQEEL 75
>AP001752-4|BAA95542.1| 461|Homo sapiens NNP-1/Nop52 (NNP-1), novel
nuclear protein 1 protein.
Length = 461
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +3
Query: 150 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEXDFTRVWKGIFYAMWMSDKP 326
EI+ A+ L+GNE R+R ++ L+K++ R F + +VWKG+FY MWM DKP
Sbjct: 10 EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69
Query: 327 LVXEDL 344
L+ E+L
Sbjct: 70 LLQEEL 75
>AK223215-1|BAD96935.1| 461|Homo sapiens nucleolar protein NOP52
variant protein.
Length = 461
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +3
Query: 150 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEXDFTRVWKGIFYAMWMSDKP 326
EI+ A+ L+GNE R+R ++ L+K++ R F + +VWKG+FY MWM DKP
Sbjct: 10 EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69
Query: 327 LVXEDL 344
L+ E+L
Sbjct: 70 LLQEEL 75
>AK223185-1|BAD96905.1| 461|Homo sapiens nucleolar protein NOP52
variant protein.
Length = 461
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +3
Query: 150 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEXDFTRVWKGIFYAMWMSDKP 326
EI+ A+ L+GNE R+R ++ L+K++ R F + +VWKG+FY MWM DKP
Sbjct: 10 EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69
Query: 327 LVXEDL 344
L+ E+L
Sbjct: 70 LLQEEL 75
>BC028386-1|AAH28386.1| 758|Homo sapiens ribosomal RNA processing 1
homolog B (S. cerevisiae) protein.
Length = 758
Score = 61.3 bits (142), Expect = 8e-10
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Frame = +3
Query: 135 AVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEXDFTRVWKGIFYAMW 311
A+ EI+FA+ L+ +E +R+R +K L++++ R F + + ++WKG+FY MW
Sbjct: 4 AMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMW 63
Query: 312 MSDKPLVXEDLA 347
+ D+PL+ E+LA
Sbjct: 64 VQDEPLLQEELA 75
>BC014005-1|AAH14005.1| 408|Homo sapiens RRP1B protein protein.
Length = 408
Score = 61.3 bits (142), Expect = 8e-10
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Frame = +3
Query: 135 AVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEXDFTRVWKGIFYAMW 311
A+ EI+FA+ L+ +E +R+R +K L++++ R F + + ++WKG+FY MW
Sbjct: 4 AMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMW 63
Query: 312 MSDKPLVXEDLA 347
+ D+PL+ E+LA
Sbjct: 64 VQDEPLLQEELA 75
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,986,422
Number of Sequences: 237096
Number of extensions: 664227
Number of successful extensions: 1156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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