Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m01
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-10|CAA93111.1|  397|Caenorhabditis elegans Hypothetical p...    52   1e-07
AL117200-15|CAB55049.2|  609|Caenorhabditis elegans Hypothetical...    32   0.098
U88173-7|AAK21383.2|  361|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    27   4.9  
U40797-12|AAN84858.1|  230|Caenorhabditis elegans Gex interactin...    26   6.4  
U40797-11|AAN84857.1|  313|Caenorhabditis elegans Gex interactin...    26   6.4  
U40797-10|AAK95871.1|  617|Caenorhabditis elegans Gex interactin...    26   6.4  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    26   8.5  
AC006807-1|AAK84615.1|  130|Caenorhabditis elegans Hypothetical ...    26   8.5  

>Z68882-10|CAA93111.1|  397|Caenorhabditis elegans Hypothetical
           protein C47E12.7 protein.
          Length = 397

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 24/72 (33%), Positives = 43/72 (59%)
 Frame = +3

Query: 132 VAVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYEFKEXDFTRVWKGIFYAMW 311
           V + + E+ FA+ L+  E   R+R ++ L  W+++   + + F + D  R+ KG+ Y MW
Sbjct: 3   VDLASVEVVFAQKLACGEPATRQRALRVLHDWIRDQSAKKH-FDDADLMRLCKGLHYVMW 61

Query: 312 MSDKPLVXEDLA 347
           M DK ++ E+LA
Sbjct: 62  MQDKMILQEELA 73


>AL117200-15|CAB55049.2|  609|Caenorhabditis elegans Hypothetical
           protein Y50E8A.6 protein.
          Length = 609

 Score = 32.3 bits (70), Expect = 0.098
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 192 VRERVIKTLKKWLQNCFHRGYEFKEXDFTRVWKGI 296
           V E+ I+ + K +   F + YE K  D T +W GI
Sbjct: 355 VTEKEIQYILKEMNRAFEKEYEIKREDVTSIWSGI 389


>U88173-7|AAK21383.2|  361|Caenorhabditis elegans Hypothetical
           protein F46F11.6 protein.
          Length = 361

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = -2

Query: 232 WSHFFSVLITRSRTLFSFPDNKRANFISWATTATCSFL 119
           W H    +     T   FPD +    +SW  +  CS L
Sbjct: 16  WKHLPREIRRNILTRLPFPDKQNMMLVSWENSQICSTL 53


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
            interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 326  WLIRHPHRIKYTLPHSREIXFFEFVSPVKTILEPLFQCFNHTFAYFV 186
            W+ R P + +    +S+E   F      KTI    F CF+H F  F+
Sbjct: 912  WISRPPKKFQNFKLYSKEKRKFTR----KTIFNRFFLCFSHIFGLFL 954


>U40797-12|AAN84858.1|  230|Caenorhabditis elegans Gex interacting
           protein protein9, isoform c protein.
          Length = 230

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 147 QEIKFARLLSGNENKVRERVIKTLKKWLQN 236
           ++I  A + +   +   +RV+ TLK+WL+N
Sbjct: 49  EQIGLATIATWATSTSHKRVVSTLKRWLKN 78


>U40797-11|AAN84857.1|  313|Caenorhabditis elegans Gex interacting
           protein protein9, isoform b protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 147 QEIKFARLLSGNENKVRERVIKTLKKWLQN 236
           ++I  A + +   +   +RV+ TLK+WL+N
Sbjct: 132 EQIGLATIATWATSTSHKRVVSTLKRWLKN 161


>U40797-10|AAK95871.1|  617|Caenorhabditis elegans Gex interacting
           protein protein9, isoform a protein.
          Length = 617

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 147 QEIKFARLLSGNENKVRERVIKTLKKWLQN 236
           ++I  A + +   +   +RV+ TLK+WL+N
Sbjct: 436 EQIGLATIATWATSTSHKRVVSTLKRWLKN 465


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
           protein Y66D12A.14 protein.
          Length = 2870

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 326 WLIRHPHRIKYTLPHSREIXFFEFVSPVKTILEPLFQCFNH 204
           W +R   R++  + +S ++  F+    ++ ILE +F+ FNH
Sbjct: 705 WYLRQSDRLQIEVEYSEDL--FK-KDTIELILEDMFRIFNH 742


>AC006807-1|AAK84615.1|  130|Caenorhabditis elegans Hypothetical
           protein Y58A7A.1 protein.
          Length = 130

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 251 SPVKTILEPLFQCFNHTFAYFVFV 180
           SP   +++PL Q F  T AYF+ +
Sbjct: 68  SPQLDLIDPLLQLFQLTIAYFLML 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,870,430
Number of Sequences: 27780
Number of extensions: 103141
Number of successful extensions: 271
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)