Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m01
         (347 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20600.1 68418.m02446 expressed protein                             42   9e-05
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf...    27   3.4  
At2g31350.2 68415.m03830 hydroxyacylglutathione hydrolase, putat...    27   4.5  
At2g31350.1 68415.m03829 hydroxyacylglutathione hydrolase, putat...    27   4.5  
At1g32550.1 68414.m04017 ferredoxin family protein similar to fe...    27   4.5  
At5g67300.1 68418.m08486 myb family transcription factor contain...    26   6.0  
At5g26090.1 68418.m03104 hypothetical protein                          26   6.0  
At5g41810.2 68418.m05091 expressed protein                             26   7.9  
At5g41810.1 68418.m05090 expressed protein                             26   7.9  

>At5g20600.1 68418.m02446 expressed protein
          Length = 532

 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = +3

Query: 126 EQVAVVAQEIK-FARLLSGNENKVRERVIKT-LKKWLQNCFHRGYEFKEXDFTRVWKGIF 299
           EQ   + ++ K   + L+  +  +R+R ++T L+ WL        E  + D  ++W+GIF
Sbjct: 11  EQALPIEEDCKSLIKKLASCKQSIRDRSLRTVLRTWLPE----QTEISDEDMKKLWQGIF 66

Query: 300 YAMWMSDKPLVXEDL 344
           Y +W +DK L   +L
Sbjct: 67  YCVWHADKSLYQSEL 81


>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]; similar to rab11 binding protein GI:4512103
           from [Bos taurus]
          Length = 593

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 210 KTLKKWLQNCFHRGYEFKEXDF 275
           K+ KKWL NCF  G + K+  +
Sbjct: 142 KSAKKWLFNCFSAGVKDKDFKY 163


>At2g31350.2 68415.m03830 hydroxyacylglutathione hydrolase, putative
           / glyoxalase II, putative similar to glyoxalase II
           isozyme [Arabidopsis thaliana] gi|2570338|gb|AAC49865
          Length = 323

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 226 GSRIVFTGDTNSKXMISRECGRVY 297
           GSR +FTGDT    M S  CG+++
Sbjct: 192 GSRAIFTGDT----MFSLSCGKLF 211


>At2g31350.1 68415.m03829 hydroxyacylglutathione hydrolase, putative
           / glyoxalase II, putative similar to glyoxalase II
           isozyme [Arabidopsis thaliana] gi|2570338|gb|AAC49865
          Length = 324

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 226 GSRIVFTGDTNSKXMISRECGRVY 297
           GSR +FTGDT    M S  CG+++
Sbjct: 193 GSRAIFTGDT----MFSLSCGKLF 212


>At1g32550.1 68414.m04017 ferredoxin family protein similar to
           ferredoxin from Synechocystis sp. [GI:48019]; contains
           Pfam profile PF00111 2Fe-2S iron-sulfur cluster binding
           domain
          Length = 181

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -2

Query: 184 SFPDNKR--ANFISWATTATCSFLV 116
           +FP N+R   NF   ATTATC F +
Sbjct: 17  NFPINRRYITNFRRGATTATCEFRI 41


>At5g67300.1 68418.m08486 myb family transcription factor contains
           PFAM profile: myb DNA binding domain PF00249
          Length = 305

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 162 ARLLSGN-ENKVRERVIKTLKKWLQNCFHRGYEFKE 266
           ARLL+G  +N V+     TLK+      HRGY+  E
Sbjct: 84  ARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSE 119


>At5g26090.1 68418.m03104 hypothetical protein 
          Length = 401

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 287 PHSREIXFFEFVSPVKTILEP 225
           PH+  + F EFV PV  ++EP
Sbjct: 336 PHNIFLRFLEFVRPVDKLVEP 356


>At5g41810.2 68418.m05091 expressed protein
          Length = 279

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 149 GDKVRAFVIWKRKQSTRTCD*NTEK-VAPELFS 244
           GDK R +V++ +  S  T   +TEK V+PE+ S
Sbjct: 226 GDKDRYYVVYDKSGSLTTIPESTEKEVSPEINS 258


>At5g41810.1 68418.m05090 expressed protein
          Length = 288

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 149 GDKVRAFVIWKRKQSTRTCD*NTEK-VAPELFS 244
           GDK R +V++ +  S  T   +TEK V+PE+ S
Sbjct: 235 GDKDRYYVVYDKSGSLTTIPESTEKEVSPEINS 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,410,648
Number of Sequences: 28952
Number of extensions: 93235
Number of successful extensions: 283
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)