Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l19
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    30   0.31 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   2.9  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   3.9  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   6.8  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   9.0  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.0  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   9.0  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -3

Query: 454  KNNSCQCTVLKLLHV*ICTFYCNESY---STLLVTSINVIHHYLPGFFGLCDCALPSL 290
            K   C CT + L ++ +C  + NE++     L +T +  ++ ++  F G+  C L S+
Sbjct: 1038 KTYVCLCTTIGLCNIYLC--FANENHIISRCLQITRLPTLYRFIILFMGVISCCLTSI 1093


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
 Frame = -1

Query: 624 AINDVL-FNASTYKKHMAELYALINNDKATFPPLDKAIKFTERVIRYRHDISRRLYSLKT 448
           +INDVL F         + L   + +DK     +   IK   + +    ++   +     
Sbjct: 598 SINDVLVFMLEQTNSTFSSLNRKLYSDKIIVGQIYDHIKDYNKALAIWSEVRIPVELAVK 657

Query: 447 TAANVPY-SNYYMYKSVLSIVMNHIAHF*LRQ*MLFIIIYLVFLVCATAHFPAFINAHQP 271
              NV Y S Y  +   L I    + HF +   + +++++ ++   A+A+F       + 
Sbjct: 658 ELENVIYNSKYEDHGKNLPINYFGLDHF-IHLRVWYVLLHKIYFFIASAYFSLKNEKFEN 716

Query: 270 EQSLLCQDVQRR 235
           E  LL QD++R+
Sbjct: 717 EFYLLAQDLRRK 728


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 600 ASTYKKHMAELYALINNDKATFPPLDKAIK 511
           A+ Y  H  E     NND+  +PP ++  K
Sbjct: 100 ANRYNSHRPERRRKTNNDRRNYPPQNRTAK 129


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 156 KLALFERSKLVATGT*ARVNRIHFDVF 236
           +LA  ER KL+         + HFDVF
Sbjct: 381 QLAFVERCKLIVNDALILAKKFHFDVF 407


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 46  PTRQ*FRSFSLANFANAAVSFYVQTVSY*NSKPTGTASWRFLN 174
           P R    SFS  + A+A  SFY+    +   K    ++W FL+
Sbjct: 156 PLRLDLNSFSSEDNADATNSFYLDEPEFCTIKGNIYSNWSFLS 198


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 266 SHYCARTFKGENIEMNSVHTRLCASSNQFAPFKKRQLAVPVGF 138
           SHY     K  +     +   L A S  F PF KR+L +P  F
Sbjct: 243 SHYHPSNAKILSYGSFPLEDNLSALSETFRPFSKRELNLPNTF 285


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 304 ALPSLYKRSPTRAVIIVPGRSKAKTSK*ILFTRAYVPVATNLLRSKSASLP 152
           A+P   +R    AV  + G   + TS+   F++  VPV  N  R   +  P
Sbjct: 487 AIPIASRRKSVSAVNTLYGVGSSYTSESFPFSKLTVPVERNSFRETESPKP 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,660
Number of Sequences: 5004
Number of extensions: 46903
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)