Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l19
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592     29   3.0  
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97...    29   4.0  
11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965     28   7.0  

>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
          Length = 853

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 388 NESYSTLLVTSINVIHHYLPGFFGLCDCALPSLYKRS 278
           +E  +T+  T+ +  HH+   +FGL  CAL  L++RS
Sbjct: 4   SECAATMPATTAHHHHHHAVAYFGL-SCALAVLHRRS 39


>06_01_0125 +
           970746-970967,971126-971226,971897-972026,972108-972333,
           972400-972502,972519-972594,972710-973333
          Length = 493

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 291 FINAHQPEQSLLCQDVQRRKHRNEFCSH 208
           + N H+PE S   Q   + + RN+FC H
Sbjct: 242 YFNEHKPEGSNRSQIAIQHRKRNKFCGH 269


>11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965
          Length = 880

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 345 ITFIDVTKSVLYDSLQ*KVQIYTCSNLSTVHWQLLFLMNTIDD 473
           +T +DVTK+ L+  L     +  C  LST+   L ++   + D
Sbjct: 205 LTAVDVTKNNLHGDLNFLSTVSNCRKLSTLQMDLNYITGILPD 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,581,757
Number of Sequences: 37544
Number of extensions: 263099
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)