Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l19
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_38354| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        28   7.1  
SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 200 ISACEQNSFRCFRL*TSWHN 259
           I ACE N+ RC+RL   WH+
Sbjct: 652 IIACEYNNIRCYRLQFRWHS 671


>SB_38354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 359 VNKCYSSLFTWFFWFVRLRTSQPL*TLTNQSSHYC 255
           +NK +  LF   + F+R R+S P+     +  HYC
Sbjct: 5   INKVFRDLFLESYSFLRDRSSCPVTRTAKERVHYC 39


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -3

Query: 313 CDCALPSLYKRSPTRAVIIVPGRSKAKTSK*ILFTRAYVPVATNLLRSKSASLPCRSVLN 134
           C     + YK +PT  + +V G++  +    +LF   +  V  +    + A++ CR +LN
Sbjct: 618 CQADCGAGYKPAPTHGIRLVNGKTSLQGRVEVLFNNKWGTVCDDGFDLRDATVICR-MLN 676

Query: 133 F 131
           F
Sbjct: 677 F 677


>SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 362 YVNKCYSSLFTWFFWFVRLRT 300
           Y++K Y  L TWF WF   +T
Sbjct: 292 YLSKIYPRLKTWFSWFNNTQT 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,915,042
Number of Sequences: 59808
Number of extensions: 340473
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)