Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l19
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan...    28   4.8  
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella...    28   4.8  
U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membr...    27   8.3  

>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
            abnormal protein1 protein.
          Length = 1732

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -1

Query: 534  PPLDKAIKFTERVIRYRHDISRRLYSLKTTAANVPYSNYYMYKSVL 397
            P LDK +     ++ +R+D+SR L  L+   A+   +N+ +YK ++
Sbjct: 1431 PLLDKYVAQYAAILVHRNDLSRVLAVLERYGASANPANFSIYKLLM 1476


>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
            transport protein protein.
          Length = 1737

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -1

Query: 534  PPLDKAIKFTERVIRYRHDISRRLYSLKTTAANVPYSNYYMYKSVL 397
            P LDK +     ++ +R+D+SR L  L+   A+   +N+ +YK ++
Sbjct: 1436 PLLDKYVAQYAAILVHRNDLSRVLAVLERYGASANPANFSIYKLLM 1481


>U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membrane
           protein) homologprotein 1 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 504 ERVIRYRHDISRRLYSLKTTAANVPYSNYYMYKSVLSIVMNH 379
           ERV     D+ +RL ++ ++  N  Y  Y     +LSI M H
Sbjct: 16  ERVALSIDDLKKRLQTISSSNTNTLYYYYMSIVVILSIAMAH 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,346,458
Number of Sequences: 27780
Number of extensions: 263369
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)