Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19l18
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148... 29 3.2
04_01_0308 + 4188726-4190351 29 3.2
04_01_0283 + 3768732-3768792,3769235-3769876,3769907-3770076,377... 29 3.2
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 29 3.2
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 29 4.2
02_05_0549 + 29900714-29900953,29902224-29902323,29902578-299027... 29 4.2
12_01_0078 - 639421-639624,639706-639876,640392-640597,640985-64... 28 7.3
08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492 27 9.7
>04_04_1379 +
33113374-33113529,33114046-33114143,33114811-33114880,
33116668-33116800,33116981-33118940,33119016-33119076,
33119554-33120057
Length = 993
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 165 QSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMK 19
Q Q D++S+ + N K QH E +K +TK E Q + V K
Sbjct: 288 QKQLDIRSEERKFNL-KSADAAHKQHLENVKKITKLEAECQRLRSMVRK 335
>04_01_0308 + 4188726-4190351
Length = 541
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -3
Query: 186 SKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMK 19
++N ++ DLK KLEEI +K + ++ + T+ N L E + +K
Sbjct: 170 AQNEEITKKLEDLKRKLEEIQTNKDLVEGETNELQPEVFATEEKNSLSEAEIKCLK 225
>04_01_0283 +
3768732-3768792,3769235-3769876,3769907-3770076,
3770134-3770511,3770602-3770991
Length = 546
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = -3
Query: 186 SKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQ 10
++N ++ DLK+KLEEI +K ++S++ EK + L+ + V+++++
Sbjct: 204 TQNEEITKDLEDLKTKLEEIKTNKD--LVESENEEKYSQSEAEIKYLKQVMGAVVEAKE 260
>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 222 CFTSSVYFFKMFSKNYNASQSQRDLKSKLEEI-NRH-KQKITIDSQHFEKIKSLTKNVNE 49
C T K+ S + S ++ L S+LE I H +Q+ I+ HF K + E
Sbjct: 914 CKTVEFLEAKLSSLQKDISSKEQSLLSELESIFQEHTEQEEKINRAHFMLNKIEKEKTLE 973
Query: 48 LQNMEKRVM 22
++N+E+ VM
Sbjct: 974 VENLEREVM 982
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/54 (24%), Positives = 30/54 (55%)
Frame = -3
Query: 162 SQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNFL 1
+++ L +INRHK +IT + +K LTK + E + +++++ ++ +
Sbjct: 917 NRQQLDKTSSDINRHKVRITTCE---KLVKKLTKGIEESRKEKEKLLAEKEKMM 967
>02_05_0549 +
29900714-29900953,29902224-29902323,29902578-29902719,
29902720-29902826,29903179-29903480
Length = 296
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = -3
Query: 351 RHLKNVNANTYRNKNNYFMETVYEQMVAIQMNNN*LLIWIKRCCFTSSVYFFKMFSKNYN 172
R V + KN V +V+I +N+ +L+W K + V + M S+ +
Sbjct: 118 RETSRVLVHCMSGKNRCDSSVVSIHVVSIVVNDRLILLWYKISRSAAIVIGYLMKSRGWR 177
Query: 171 ASQSQRDLKSKLEEI 127
SQS + +K + ++
Sbjct: 178 LSQSYQWVKDRRPQV 192
>12_01_0078 -
639421-639624,639706-639876,640392-640597,640985-641100,
641669-641855,642104-642338
Length = 372
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 528 NMNVKTAYHKMILVKPC 478
NMN+KTAY K+ +PC
Sbjct: 303 NMNLKTAYEKLTSKRPC 319
>08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492
Length = 790
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 165 QSQRDLKSKLEEINRHKQKITIDSQHF-EKIKSLTKNVNELQNMEKRVMKSRQNF 4
Q D + L+EI+ K I D F +K+ + K EL+ EKRV + +NF
Sbjct: 587 QQTSDARISLQEISSRKAVIQQDIATFKQKLSFIDKRGPELE-AEKRVAAAARNF 640
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,490,646
Number of Sequences: 37544
Number of extensions: 286642
Number of successful extensions: 656
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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