Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l18
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29963| Best HMM Match : E-MAP-115 (HMM E-Value=1.6)                 30   1.4  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              30   1.4  
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)         30   1.9  
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_56568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07)                   29   2.4  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_45232| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              29   3.2  
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        29   4.3  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)                 28   7.5  
SB_56065| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_3896| Best HMM Match : 7tm_1 (HMM E-Value=0.00045)                  27   9.9  
SB_57319| Best HMM Match : Pox_A_type_inc (HMM E-Value=6.3e-06)        27   9.9  
SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_15994| Best HMM Match : Pox_A_type_inc (HMM E-Value=2e-06)          27   9.9  

>SB_29963| Best HMM Match : E-MAP-115 (HMM E-Value=1.6)
          Length = 238

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 153 DLKSKLEEINRHKQKITIDSQHF-EKIKSLTKNVNELQNME 34
           D KSKLE+ N+   ++ +D+Q   ++  +L + VN+L  M+
Sbjct: 196 DFKSKLEKANKELDQLRLDNQRLKDENSALLRVVNQLSTMK 236


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 186  SKNYNASQSQRDLKSKLEEINRHKQKIT-IDSQHFEKIKSLTKNVNELQNMEKRVMKSRQ 10
            SK Y   Q +  LK+++ +I    + +   D++  ++I  L   +NEL+NM  R+   R 
Sbjct: 1353 SKEYIEGQLE-SLKAQMSKIKDENENLKESDARRQQEILDLENRINELENMLARISAERD 1411

Query: 9    NFL 1
              L
Sbjct: 1412 RAL 1414


>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
          Length = 1177

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 183 KNYNASQSQ-RDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQN 40
           K+ N+ + + R L  +L   N  K K+    +HFEK + LTK ++ L+N
Sbjct: 374 KDLNSMRKKNRQLTEELN--NERKLKVKDAKEHFEKCEFLTKEMHRLKN 420


>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 8   FCLDFITLFSIFCSSFT-FFVRLLIFSKCWLSIVIFCLCLLISSNLDF 148
           F LDFI L + F  SF+ F V   +    W+S+ I     L    LDF
Sbjct: 323 FGLDFIVLLASFGVSFSSFIVEFEVHCWAWISLFIVNFVCLFGVYLDF 370


>SB_56568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = -3

Query: 195 KMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKS 16
           ++   N + ++   +LKS LEEI   K+K   D +  EK+  L+K  + L+    +  K 
Sbjct: 239 RLKKSNQDLNKITEELKSTLEEIEMVKKKGNKDLE--EKVGVLSKEKSNLEKEANKYRKQ 296

Query: 15  RQ 10
           R+
Sbjct: 297 RE 298


>SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07)
          Length = 352

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 528 NMNVKTAYHKMILVKPCATQQEHDNVETCSA 436
           ++N++  YH+  L+K C+   E DNV   SA
Sbjct: 51  DLNIRPPYHRKRLLKFCSELGEQDNVAATSA 81


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 528 NMNVKTAYHKMILVKPCATQQEHDNVETCSA 436
           ++N++  YH+  L+K C+   E DNV   SA
Sbjct: 51  DLNIRPPYHRKRLLKFCSELGEQDNVAATSA 81


>SB_45232| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 381

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 454 VIVFLLSGARFDQYHLVICGFDIHVQRNNLRVIAFVGIKL*MASVCFPKFFVVK 615
           V V  L    FD+++ V+  F  H+  +N+RV       L     C P F+ VK
Sbjct: 124 VSVLSLVFMTFDRFNAVVFPFKAHLVSSNVRVCLLTLSWLFAFGFCAPYFYAVK 177


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -3

Query: 186  SKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKS 16
            SK    S+  +  K ++ EI   K+++   S H E+I  LTK +  +Q  E+  ++S
Sbjct: 1000 SKLEQVSEELQLSKRRVMEIEIEKEQLK--SSHGEEISDLTKKIGSVQENEEGTLES 1054


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 174 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSL 67
           +  +SQ+DL+ K + + + +Q+I     H  +IKS+
Sbjct: 513 SGDESQQDLQQKQKRLQKFRQEIQSREYHITRIKSI 548


>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -3

Query: 168 SQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKN--VNELQNMEKRVMKSR 13
           ++ + +LK K+ E   H++K+T+  QH   ++   +N  +  L   E++  K R
Sbjct: 167 NEREVELKVKMVEAKFHEEKLTLQQQHDVAVQKHCRNCYIAPLDGAERKPRKRR 220


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 177  YNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKS-LTKNVNELQNMEKRVMK 19
            ++  +S R    K EE+   ++K+ +  Q F + KS L K  ++   +EK+V++
Sbjct: 895  HDLEESLRTNSKKTEEVLELQEKLELIQQEFHRRKSLLLKEQSKSSELEKKVLE 948


>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 378  TQPICPFNLRHLKNVNANTYRNKNNYFMETVY 283
            TQ +CP NLR  +  N    R   NY+   VY
Sbjct: 1310 TQNMCPLNLRRRRTFNVQPLR--TNYYYRVVY 1339


>SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)
          Length = 1193

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -3

Query: 186 SKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMK 19
           S+ Y    +  +   ++E+I+ HKQ + +    +E+IKS + N   LQ +   + K
Sbjct: 753 SRAYLPEVNATEFIQEMEKID-HKQYLPVSKARWEQIKSASANDTVLQQLRVMLQK 807


>SB_56065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 53  FTFFVRLLIFSKCWLSIVIFCLCLLISSN 139
           FTFF+ LL F  CW     F    ++  N
Sbjct: 241 FTFFIALLAFFACWAPFFSFIAFAVVVKN 269


>SB_3896| Best HMM Match : 7tm_1 (HMM E-Value=0.00045)
          Length = 538

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -3

Query: 192 MFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSR 13
           ++SK YN  +S   L+ K +   R K K  +  +    +    K+ NEL++  K  ++ +
Sbjct: 226 LYSKTYNNLKSSSALRDKSKNALRDKSKNALRDKSKNALSD--KSENELRDKNKNALRDK 283


>SB_57319| Best HMM Match : Pox_A_type_inc (HMM E-Value=6.3e-06)
          Length = 348

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
 Frame = -3

Query: 354 LRHLKNVNANTYRNKNNYFMETVYEQMVAIQMNNN*LLIWIKRCCFTSSVYFFKMFSKNY 175
           L  +KN     Y+ +     E   E    I+   + L +  K           K    N 
Sbjct: 77  LLEIKNNEIEKYKQQITGLNEKEVELRKTIEQKEHLLQMAEKEIVKLREQLTSKADYGNI 136

Query: 174 NASQSQRDLKSKLE----EINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQN 7
           +A + QR ++++LE    EI+    K+   SQ   K+K+  K++ ELQ  EK + +  Q 
Sbjct: 137 HAEELQR-IRNELEKCKNEISDLNSKLNTKSQ---KLKTYKKHIGELQEREKDLDRQLQE 192

Query: 6   FL 1
            L
Sbjct: 193 AL 194


>SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1401

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/57 (24%), Positives = 34/57 (59%)
 Frame = -3

Query: 186 SKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKS 16
           SK  + S  Q +LKS + ++N+H +   + +Q  ++ +++ +   E + +E+R+ +S
Sbjct: 110 SKTADKSAQQAELKSIINDLNKHLE--AMKTQVAQQQEAIGQLQQEKEGLEQRLQES 164


>SB_15994| Best HMM Match : Pox_A_type_inc (HMM E-Value=2e-06)
          Length = 364

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
 Frame = -3

Query: 354 LRHLKNVNANTYRNKNNYFMETVYEQMVAIQMNNN*LLIWIKRCCFTSSVYFFKMFSKNY 175
           L  +KN     Y+ +     E   E    I+   + L +  K           K    N 
Sbjct: 77  LLEIKNNEIEKYKQQITGLNEKEVELRKTIEQKEHLLQMAEKEIVKLREQLTSKADYGNI 136

Query: 174 NASQSQRDLKSKLE----EINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQN 7
           +A + QR ++++LE    EI+    K+   SQ   K+K+  K++ ELQ  EK + +  Q 
Sbjct: 137 HAEELQR-IRNELEKCKNEISDLNSKLNTKSQ---KLKTYKKHIGELQEREKDLDRQLQE 192

Query: 6   FL 1
            L
Sbjct: 193 AL 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,818,970
Number of Sequences: 59808
Number of extensions: 362196
Number of successful extensions: 979
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)