Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l18
         (644 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y00067-1|CAA68276.1|  916|Homo sapiens NF-M protein.                   30   8.1  
U51587-1|AAB81549.1|  767|Homo sapiens Golgi complex autoantigen...    30   8.1  
EF560737-1|ABQ59047.1|  877|Homo sapiens NEFM protein protein.         30   8.1  
EF560736-1|ABQ59046.1|  916|Homo sapiens NEFM protein protein.         30   8.1  
BC096757-1|AAH96757.1|  916|Homo sapiens neurofilament, medium p...    30   8.1  
BC032853-1|AAH32853.1|  767|Homo sapiens golgi autoantigen, golg...    30   8.1  
AL451125-2|CAI14346.1|  767|Homo sapiens golgi autoantigen, golg...    30   8.1  
AL354928-1|CAI39632.1|  767|Homo sapiens golgi autoantigen, golg...    30   8.1  
AB208858-1|BAD92095.1|  400|Homo sapiens golgin 97 variant protein.    30   8.1  

>Y00067-1|CAA68276.1|  916|Homo sapiens NF-M protein.
          Length = 916

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 165 QSQRDLKSKLEEINRHKQKITIDSQHFEK 79
           Q  R+L++ LE +N  K ++ +DS H E+
Sbjct: 152 QEIRELRATLEMVNHEKAQVQLDSDHLEE 180


>U51587-1|AAB81549.1|  767|Homo sapiens Golgi complex autoantigen
           golgin-97 protein.
          Length = 767

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 174 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 28
           N++Q   DL  KLEE+ RH    T++ Q    I S T   +++  +E++
Sbjct: 218 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 264


>EF560737-1|ABQ59047.1|  877|Homo sapiens NEFM protein protein.
          Length = 877

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 165 QSQRDLKSKLEEINRHKQKITIDSQHFEK 79
           Q  R+L++ LE +N  K ++ +DS H E+
Sbjct: 152 QEIRELRATLEMVNHEKAQVQLDSDHLEE 180


>EF560736-1|ABQ59046.1|  916|Homo sapiens NEFM protein protein.
          Length = 916

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 165 QSQRDLKSKLEEINRHKQKITIDSQHFEK 79
           Q  R+L++ LE +N  K ++ +DS H E+
Sbjct: 152 QEIRELRATLEMVNHEKAQVQLDSDHLEE 180


>BC096757-1|AAH96757.1|  916|Homo sapiens neurofilament, medium
           polypeptide 150kDa protein.
          Length = 916

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 165 QSQRDLKSKLEEINRHKQKITIDSQHFEK 79
           Q  R+L++ LE +N  K ++ +DS H E+
Sbjct: 152 QEIRELRATLEMVNHEKAQVQLDSDHLEE 180


>BC032853-1|AAH32853.1|  767|Homo sapiens golgi autoantigen, golgin
           subfamily a, 1 protein.
          Length = 767

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 174 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 28
           N++Q   DL  KLEE+ RH    T++ Q    I S T   +++  +E++
Sbjct: 218 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 264


>AL451125-2|CAI14346.1|  767|Homo sapiens golgi autoantigen, golgin
           subfamily a, 1 protein.
          Length = 767

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 174 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 28
           N++Q   DL  KLEE+ RH    T++ Q    I S T   +++  +E++
Sbjct: 218 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 264


>AL354928-1|CAI39632.1|  767|Homo sapiens golgi autoantigen, golgin
           subfamily a, 1 protein.
          Length = 767

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 174 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 28
           N++Q   DL  KLEE+ RH    T++ Q    I S T   +++  +E++
Sbjct: 218 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 264


>AB208858-1|BAD92095.1|  400|Homo sapiens golgin 97 variant protein.
          Length = 400

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 174 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 28
           N++Q   DL  KLEE+ RH    T++ Q    I S T   +++  +E++
Sbjct: 117 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 163


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,512,411
Number of Sequences: 237096
Number of extensions: 1632836
Number of successful extensions: 3151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3145
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)