Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l16
         (204 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377...    26   3.6  
02_05_0382 + 28491318-28491374,28492031-28492114,28492249-284922...    26   3.6  
10_01_0047 - 656357-656766,657061-657226,657333-657515,657628-65...    26   4.8  
09_03_0166 + 12956794-12956832,12956936-12956977,12957084-129571...    25   6.4  
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559...    25   8.4  
03_03_0074 + 14278725-14278934,14279045-14279806                       25   8.4  
03_03_0073 - 14269472-14270233,14270344-14270526                       25   8.4  

>04_03_0306 +
           14136338-14136686,14137408-14137442,14137701-14137778,
           14138046-14138124,14138731-14138823,14139472-14139556,
           14140270-14140345,14140669-14140794,14141039-14141137,
           14141238-14141339,14141561-14141671,14141809-14141904,
           14142488-14142539,14142624-14142735,14142879-14142943,
           14144124-14144521,14145236-14145330,14145989-14146015,
           14146081-14146156,14146368-14146421,14146741-14146863,
           14146955-14147023
          Length = 799

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 58  WGCMNNSAYL*VFLLQNCYENSKILIYLRDG 150
           WG +N + Y+ + +L+N  + +++L+   DG
Sbjct: 153 WGVINGATYVNIDMLENNKDKTRMLLVEDDG 183


>02_05_0382 +
           28491318-28491374,28492031-28492114,28492249-28492272,
           28492398-28492472,28493083-28493157,28493198-28493290,
           28493332-28493409,28493690-28493767,28494084-28494147,
           28494474-28494655,28494729-28495064,28495148-28495267,
           28495434-28495923,28496240-28496502
          Length = 672

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +1

Query: 7   SPSFCNIYCRTRKYARWWGCMNNSAYL*VFLLQNCYENSKILIYLRDGYY 156
           SPS+ +  C  R     W  MN+S    +       +   IL Y+R G +
Sbjct: 398 SPSYGHYVCSVRSSPSTWHLMNDSHVDLISEASALNQEGYILFYIRQGKF 447


>10_01_0047 -
           656357-656766,657061-657226,657333-657515,657628-657849
          Length = 326

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 55  IGRTYVYDNKYYKNL 11
           I   YV+DN+YY+NL
Sbjct: 243 ITSAYVFDNRYYQNL 257


>09_03_0166 +
           12956794-12956832,12956936-12956977,12957084-12957149,
           12957237-12957350,12957435-12957515,12957613-12957690,
           12958702-12958784,12959645-12959726,12959801-12959901,
           12960016-12960055,12960162-12960221,12960302-12960348,
           12960437-12960575,12960716-12960931,12961010-12961344,
           12961525-12961596,12962449-12962589,12962680-12962716,
           12962837-12963256
          Length = 730

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 29  IVVHVSTPDGGGV*IIRH-IYRFFYYKT 109
           IV  VS   G G+ + R  + RFFYY+T
Sbjct: 562 IVPRVSQTVGAGITVPRRRLLRFFYYRT 589


>04_03_0129 -
           11554917-11555033,11555470-11555613,11555807-11555999,
           11556083-11556139,11556300-11556403,11556882-11556953,
           11557069-11557187,11557639-11557783,11558527-11558672,
           11558758-11558827,11559000-11559056,11559081-11559228,
           11559311-11559432,11559649-11559845,11560296-11560350,
           11560468-11560680,11561239-11561386,11561515-11561585,
           11563286-11563316,11563532-11563623,11565621-11565688,
           11567895-11568069
          Length = 847

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 79  AYL*VFLLQNCYENSKILIYLRDGYYFHLY 168
           AY  + ++ NC  +SK L +  D Y FH+Y
Sbjct: 592 AYPDIQIISNCDGSSKPLDHPADIYDFHVY 621


>03_03_0074 + 14278725-14278934,14279045-14279806
          Length = 323

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -3

Query: 118 FRNSFVIKKPINMPNYSYTPTIGRTYV----YDNKYYKNL 11
           F N    + P N P  S  PT+ +  V    +DN+YYKN+
Sbjct: 220 FANFLKQRCPAN-PTSSNDPTVNQDAVTPNAFDNQYYKNV 258


>03_03_0073 - 14269472-14270233,14270344-14270526
          Length = 314

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -3

Query: 118 FRNSFVIKKPINMPNYSYTPTIGRTYV----YDNKYYKNL 11
           F N    + P N P  S  PT+ +  V    +DN+YYKN+
Sbjct: 211 FANFLKQRCPAN-PTSSNDPTVNQDAVTPNAFDNQYYKNV 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,525,360
Number of Sequences: 37544
Number of extensions: 83896
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)