Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l16
         (204 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           28   1.4  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   27   2.4  
SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   4.1  
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  
SB_13355| Best HMM Match : HlyD (HMM E-Value=0.29)                     25   9.5  

>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 506

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 172 NDTNGNNNHLANK*VFYCFRNSFVIKKPI 86
           ND N NN    NK   +   NSF I  P+
Sbjct: 379 NDNNNNNKSSCNKRYTFLSNNSFTITSPL 407


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 127 FYCFRNSFVIKKPINMPNYSYTP 59
           F CFRN+ ++K    +P +++ P
Sbjct: 123 FLCFRNTAILKSSCKLPVFNFRP 145


>SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 2   KTAQVFVIFIVVHVSTPDGGGV*IIRHIYRFFYYKTVTKTVKYLFICEMVI 154
           +  +VF +F+  ++S P GGG       Y FF ++   K +  L +  + +
Sbjct: 376 REVRVFGVFVPENLSKPTGGGG---NGTYTFFLFQPYQKVLAGLLVVALAV 423


>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 840

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/32 (21%), Positives = 18/32 (56%)
 Frame = +2

Query: 71  IIRHIYRFFYYKTVTKTVKYLFICEMVIISIC 166
           + R++Y FF++   T+  +Y++     + + C
Sbjct: 13  VFRYVYSFFFFAMFTRCFQYVYPVFFAMFTRC 44


>SB_13355| Best HMM Match : HlyD (HMM E-Value=0.29)
          Length = 327

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 115 RNSFVIKKPINMPNYSYTPTIGRTYVYDN 29
           +N+F+I  P++    S+ P +G+T+   N
Sbjct: 226 KNNFLIAAPLSGRLSSFDPILGKTFTQGN 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,755,041
Number of Sequences: 59808
Number of extensions: 114450
Number of successful extensions: 390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 16,821,457
effective HSP length: 46
effective length of database: 14,070,289
effective search space used: 295476069
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)