Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l15
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33...    31   1.1  
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253     30   1.5  
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388     30   1.5  
03_01_0298 + 2318836-2319051,2321238-2323106                           29   3.5  
04_04_0463 - 25397837-25399693,25402136-25402405                       28   8.0  

>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
            336577-336734,337180-337310,337385-337472,337587-337690,
            338346-338444,339060-339116,339262-339337,339519-339602,
            339969-340010,340128-340198,341516-341564,342370-342441,
            343149-343286,343393-343473,344166-344353,344591-345188,
            345274-345342,346729-346854,347048-347175,347986-348142,
            348342-348388,348472-348535,348691-348765,349292-349414,
            349797-349982,351179-351303,351390-351459,351974-352101,
            352585-352726,353065-353163,353239-353285,353598-353652,
            353758-353967,354686-354757,354836-354905,355231-355414,
            355521-355644,355732-355863,356252-356317,356805-356852,
            357572-357676,357728-357865,358097-358399,358482-358594,
            359082-359148,359236-359310,359395-359517,359610-359618,
            360156-360320,360401-360502,361545-361696,361794-361995,
            362079-362126,362215-362298,362613-362657,363302-363385,
            363890-363970,364044-364133,364217-364279,364824-364841,
            365238-365378,365494-365550,366091-366185,366275-366383,
            367067-367156,367308-367387,367480-367558,367742-367903,
            368005-368136,368335-368469,368553-368618,369317-369457,
            369575-369648,369685-369910
          Length = 2905

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
 Frame = +3

Query: 324  YTSKRDRFYESFKRY-HAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQ 500
            Y S++ R Y     Y       YE    +N     +++++ K  ++ T+ + + S  K +
Sbjct: 2165 YKSRQCRTYFHLAHYTDGLFKSYEERLSSNEWQAALRLRKYKSKELDTLMKRLKSSSKSE 2224

Query: 501  KT-YELAEFDLKNLSSLESYETLKIKLALSKYMAML 605
            KT Y +   +L+   +L+  E  KI+   +K+ A +
Sbjct: 2225 KTDYSVKIQELQKQLALDEEEAGKIQCTHAKFSAKI 2260


>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
          Length = 326

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +3

Query: 423 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 602
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++ E    + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 603 LSTLEM 620
             TL++
Sbjct: 290 AETLDV 295


>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
          Length = 327

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +3

Query: 423 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 602
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++ E    + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 603 LSTLEM 620
             TL++
Sbjct: 290 AETLDV 295


>03_01_0298 + 2318836-2319051,2321238-2323106
          Length = 694

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 183 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 281
           A   H F HF C SSN    NYVC + +  WK+L
Sbjct: 92  AECSHEF-HFHCISSNVNHGNYVCPVCRAEWKEL 124


>04_04_0463 - 25397837-25399693,25402136-25402405
          Length = 708

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 183 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 281
           A   H+F HF C SSN    NY C I +  WK++
Sbjct: 111 AECSHMF-HFHCISSNVKHGNYFCPICRAKWKEI 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,083,047
Number of Sequences: 37544
Number of extensions: 248009
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)