Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19l15
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43031| Best HMM Match : OEP (HMM E-Value=0.27) 31 0.87
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_41618| Best HMM Match : OEP (HMM E-Value=0.56) 29 2.7
SB_54706| Best HMM Match : Linker_histone (HMM E-Value=0.014) 29 3.5
SB_39148| Best HMM Match : OEP (HMM E-Value=0.33) 29 3.5
SB_15032| Best HMM Match : OEP (HMM E-Value=0.24) 28 6.2
SB_30634| Best HMM Match : Apolipoprotein (HMM E-Value=0.16) 28 6.2
>SB_43031| Best HMM Match : OEP (HMM E-Value=0.27)
Length = 445
Score = 31.1 bits (67), Expect = 0.87
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = +3
Query: 363 RYHAS*SLYEHA-SKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQK-TYELAEFDLKN 536
+Y + + Y+HA +K + + K+ K + ++ + K+ K TY+LA+ K
Sbjct: 226 KYKLAKAKYKHAKAKYKLANAKYKLANAKYKLAKAKYKLAKATYKLAKATYKLAKAKYKL 285
Query: 537 LSSLESYETLKIKLALSKYMAMLSTLEMTHRCWKYLETKQTLXK 668
+ K KLA +KY + ++ +K + K L K
Sbjct: 286 AKAKYKLAKAKYKLAKAKYKLAKAKHKLAKAKYKLAKAKHKLAK 329
>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 420 KCIKMKRVKCNKVR-TVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 596
K + KR K++ T E+V +K +K + L + +LK L E Y+ LK K L KY+
Sbjct: 68 KSAEAKRESKKKIKETERELV---QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124
>SB_41618| Best HMM Match : OEP (HMM E-Value=0.56)
Length = 355
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = +3
Query: 363 RYHAS*SLYEHAS-KANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKT-YELAEFDLKN 536
+Y + + Y+ A+ K + + K+ + K ++ N+ K+ T Y+LA+ K
Sbjct: 67 KYKLANTKYKLANTKYKLANTKYKLAKAKYKLANAKYKLANAKYKLANTKYKLAKAKYKL 126
Query: 537 LSSLESYETLKIKLALSKYMAMLSTLEMTHRCWKYLETKQTLXK 668
++ K KLA +KY + ++ +K TK L K
Sbjct: 127 ANAKYKLAKAKYKLAKAKYKLAKAKYKLAKAKYKLANTKYKLAK 170
>SB_54706| Best HMM Match : Linker_histone (HMM E-Value=0.014)
Length = 323
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 429 KMKRVKCNKVRTVTEIVNSDEKIQKT-YELAEFDLKNLSSLESYETLKIKLALSKYMAML 605
K+ + K ++ N++ K+ K Y+LA+ K + K KLA +KY
Sbjct: 192 KLAKAKYKLANAKYKLANANNKLAKAKYKLAKAKYKLAKAKYKLAKAKYKLAKAKYKLAK 251
Query: 606 STLEMTHRCWKYLETKQTLXK 668
+ ++ + +K + K L K
Sbjct: 252 AKYKLANAKYKLAKAKYKLAK 272
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 429 KMKRVKCNKVRTVTEIVNSDEKIQKT-YELAEFDLKNLSSLESYETLKIKLALSKYMAML 605
K+ + K + ++ N+ K+ K Y+LA+ K + K KLA +KY
Sbjct: 241 KLAKAKYKLAKAKYKLANAKYKLAKAKYKLAKAKYKLAKAKYKLAKAKYKLAKAKYKLAN 300
Query: 606 STLEMTHRCWKYLETKQTLXK 668
+ ++ + +K + K L K
Sbjct: 301 AKYKLANAKYKLAKAKYKLAK 321
>SB_39148| Best HMM Match : OEP (HMM E-Value=0.33)
Length = 208
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 429 KMKRVKCNKVRTVTEIVNSDEKIQKT-YELAEFDLKNLSSLESYETLKIKLALSKYMAML 605
K+ + K + ++ + K+ K Y+LA+ K + + K KLA +KY
Sbjct: 53 KLAKAKYKLAKAKYKLAKAKYKLAKAKYKLAKAKYKLVKATYKLANAKYKLAKAKYKPAK 112
Query: 606 STLEMTHRCWKYLETKQTLXK 668
+T ++ +K K L K
Sbjct: 113 ATYKLAKAKYKLANAKNKLAK 133
>SB_15032| Best HMM Match : OEP (HMM E-Value=0.24)
Length = 312
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 429 KMKRVKCNKVRTVTEIVNSDEKIQK-TYELAEFDLKNLSSLESYETLKIKLALSKYMAML 605
K+ K + ++V + K+ K TY+LA+ K + K KLA +KY
Sbjct: 11 KLANAKYKLAKATYKLVKATYKLAKATYKLAKAKYKLAKAKYKLAKAKYKLAKAKYKLAK 70
Query: 606 STLEMTHRCWKYLETKQTLXK 668
+ ++ +K + K L K
Sbjct: 71 AKHKLAKAKYKLAKAKHKLAK 91
>SB_30634| Best HMM Match : Apolipoprotein (HMM E-Value=0.16)
Length = 558
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +3
Query: 429 KMKRVKCNKVRTVTEIVNSDEKIQKT-YELAEFDLKNLSSLESYETLKIKLALSKYMAML 605
K+ K T ++ N+ K+ T Y+LA+ K + K KLA +KY
Sbjct: 384 KLANAKYKLANTKYKLANTKYKLANTKYKLAKAKYKLAKAKYKLANAKYKLANTKYKLAK 443
Query: 606 STLEMTHRCWKYLETKQTLXK 668
+ ++ + +K K L K
Sbjct: 444 AKYKLANAKYKLANAKYKLAK 464
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = +3
Query: 363 RYHAS*SLYEHAS-KANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKT-YELAEFDLKN 536
+Y + + Y+ A+ K + + K+ + K + ++ N+ K+ T Y+LA+ K
Sbjct: 389 KYKLANTKYKLANTKYKLANTKYKLAKAKYKLAKAKYKLANAKYKLANTKYKLAKAKYKL 448
Query: 537 LSSLESYETLKIKLALSKYMAMLSTLEMTHRCWKYLETKQTLXK 668
++ K KLA +KY + ++ +K K L K
Sbjct: 449 ANAKYKLANAKYKLAKAKYKLANAKYKLAKAKYKLANAKYKLAK 492
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,766,711
Number of Sequences: 59808
Number of extensions: 303958
Number of successful extensions: 759
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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