Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l11
         (327 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   1.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   1.9  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    20   7.6  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 105 YVKINYFISVLLFDCRSRRRPARPLHDC 188
           Y ++    ++L+FD RS R    P  DC
Sbjct: 180 YPRLQRCPAMLVFDRRSLRCVVPPTEDC 207


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 139 YLIVAAGAARPGPYT 183
           Y+   AG   PGPYT
Sbjct: 287 YINKEAGGGSPGPYT 301


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -1

Query: 231 LLGKHNTLKLIL 196
           +LG+HNT++ +L
Sbjct: 357 ILGRHNTIEHLL 368


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,064
Number of Sequences: 336
Number of extensions: 804
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6261139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)