Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l11
         (327 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0548 - 18685114-18685230,18685615-18685724,18685779-186858...    27   4.6  
12_01_0838 - 7830944-7831444                                           26   6.1  
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208...    26   8.0  
02_01_0406 - 2958933-2962076                                           26   8.0  

>10_08_0548 -
           18685114-18685230,18685615-18685724,18685779-18685802,
           18686135-18686213,18686346-18686588,18686659-18686823,
           18686960-18687037,18687185-18687231,18687319-18687379,
           18687667-18687723,18688164-18688247,18689292-18689357,
           18689447-18689574,18689693-18689885
          Length = 483

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 VLLFDCRSRRRPARPLHDC*NKVSTLMYCVFLIKE 236
           +LLF+C S R P R L  C         CVFL+K+
Sbjct: 375 ILLFNCMSVRDPQR-LLPCLLATCAQNACVFLLKQ 408


>12_01_0838 - 7830944-7831444
          Length = 166

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 246 LYTTLLLGKHNTLKLILYFNNRVGAGPGGAG 154
           L  T+ L K N  ++I Y     G G GG G
Sbjct: 12  LLLTISLSKSNAARVIKYNGGESGGGGGGGG 42


>03_01_0270 -
           2085461-2086205,2086260-2086339,2086598-2086690,
           2086774-2086881,2087012-2087101,2087234-2087275,
           2087516-2087587,2090848-2090985,2091074-2092624
          Length = 972

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 225 GKHNTLKLILYFNNRVGAGPGG 160
           G HN+ KL  Y + RVG   GG
Sbjct: 176 GNHNSHKLSTYTSGRVGKSRGG 197


>02_01_0406 - 2958933-2962076
          Length = 1047

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = -1

Query: 219 HNTLKLILYFNNRVGAGPGGA-GCDNQIIKRL*NN*F 112
           HN   L LYFNN  G  P     C N    RL  N F
Sbjct: 348 HNLKTLDLYFNNFTGTIPESIYSCSNLTALRLSGNHF 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,856,201
Number of Sequences: 37544
Number of extensions: 83389
Number of successful extensions: 279
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)