Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l11
         (327 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)                   28   1.6  
SB_240| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-31)                   26   8.3  

>SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)
          Length = 649

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 81  SFSGMCKIYVKINYFISVLLFDCRSRRRP 167
           S++G+C  Y ++  F ++LL D   RR+P
Sbjct: 463 SYNGVCGHYAELGQFGNILLEDLTFRRKP 491


>SB_240| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-31)
          Length = 308

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 198 LYFNNRVGAGPGG 160
           LYFNN + AGP G
Sbjct: 209 LYFNNTIAAGPAG 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,635,468
Number of Sequences: 59808
Number of extensions: 79949
Number of successful extensions: 148
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)