Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19l09
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014) 33 0.16
SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15) 30 1.5
SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6) 29 2.7
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 28 6.1
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) 28 6.1
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08) 28 6.1
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08) 28 6.1
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9) 28 8.1
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0) 28 8.1
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9) 28 8.1
>SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)
Length = 735
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 73 PTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAE 222
PT RT+ D+K ++ L+K K + + +E E K+W L NYM AE
Sbjct: 87 PTFARTFAVDSKVTPSVIALLKQFKWEIVAIIYE-EWKKWVQLKNYMKAE 135
>SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)
Length = 373
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +3
Query: 69 HPHHRAYLRVRQ*ILQKLGLSYQKRQAQEAPSRT*TRGEAMGSSRQLHGCRRSLFRTGQK 248
H + R+Y + ++LG S + + ++ ++ +S + GC SL GQ
Sbjct: 19 HRNTRSYRTKSRFSAKRLGKSRNIKNRKSVRTKL---QDSRNNSTAIFGCNMSLLNKGQS 75
Query: 249 PKT---YPF*RNS-QC-ETRY 296
PK+ +PF R++ QC E+RY
Sbjct: 76 PKSRRVHPFARHAGQCAESRY 96
>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
Length = 416
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -3
Query: 244 CPVLKRDLRQPCSCLEDPIASPLVHVRLGASCAWRF**DSPSFCNIYC 101
CP + R + PC ++ P++ P +V S + + S C YC
Sbjct: 71 CPYVNRTVSVPCPYVKRPVSVPCPYVNRAVSVPCPYVNRAVSVCQPYC 118
>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 407 TSSPTSNPHAPTGATSSSLNTLLGGKKTT--CPTK 505
T S T P PT + +SS + GG KTT C T+
Sbjct: 353 TGSRTRTPPTPTSSRASSRGSARGGAKTTKKCTTR 387
>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 765
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 416 PTSNPHAPTGATSSSLNTLLGGKKTTCPT 502
P S H+P +T S+NT+L + CP+
Sbjct: 703 PVSRYHSPRPSTCLSINTILHDQARACPS 731
>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
Length = 186
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 253 KLTLF-KEIRSVKPDTM--KLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANL 423
KL +F K+ PD + ++++ S ++ RE W + PI + + + +L
Sbjct: 96 KLQIFVKQKLEGVPDKIMGRVVLGTSAEDLEREHWNEAMTAKKPIARWHSLREFH--NSL 153
Query: 424 KPTRPNRCYKFLA 462
PTRPNR K +A
Sbjct: 154 LPTRPNRTSKPIA 166
>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
Length = 535
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 502 EVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYI 681
E I + ++ NN + + GG + +E S E+ N V WEN + YI
Sbjct: 101 ETINVTGNYWLPSNNVLELKYLRDIGGVTWTDNCAECCLSKETSQNSVTWENLRSEMYYI 160
Query: 682 G 684
G
Sbjct: 161 G 161
>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
Length = 1213
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 328 EFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKPTR 435
E RET R E+ FP++ E+ L+ LK T+
Sbjct: 170 ESCRETGKRVAEELFPVIAQDELSTPLLMGKLKRTK 205
>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
Length = 279
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 100 DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 210
D N C+ K + +HL VE++Q +K W DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205
>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 805
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/78 (20%), Positives = 41/78 (52%)
Frame = +1
Query: 133 IKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIV 312
+K+ K++ ++ E ++ + +L + A++ K ++L KE+ +++ + L
Sbjct: 436 LKDLKKEHDALQSESKKDKAELAKLDIAAQEGLAAMEKVEELN--KEVIALREENKTLSD 493
Query: 313 NWSGKEFLRETWTRFVED 366
N++ + LR+ + VED
Sbjct: 494 NFNSERILRKKYYNMVED 511
>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
Length = 279
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 100 DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 210
D N C+ K + +HL VE++Q +K W DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,557,768
Number of Sequences: 59808
Number of extensions: 521415
Number of successful extensions: 1785
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1784
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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