Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l07
         (165 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    30   0.047
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   0.77 
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    24   2.3  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    24   3.1  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    23   4.1  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    23   4.1  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    23   7.1  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    22   9.4  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           22   9.4  

>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 29.9 bits (64), Expect = 0.047
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 131 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNRII 27
           Y    ES + D+ +  SH+ A +I Q  R+G R++
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKRLL 97


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 13   MSTTYIILLPFLLTCAIASAAECENATSLS 102
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 8   IKCRRLILFCYRFSS 52
           I+CR  + FC+RF S
Sbjct: 66  IQCRDFMFFCWRFQS 80


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 101 PS*STRSSQRTIGTPPPTPK 160
           P   +RSS    G PPP PK
Sbjct: 12  PPNDSRSSTPATGPPPPIPK 31


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 34  LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSP 147
           L+     C I     C  A  L  + DSL+  Y+  SP
Sbjct: 371 LISIFKRCEIMLPKTCTVAHLLDKLFDSLVLKYNTSSP 408


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 112 DSLLATYDRDSPPDS 156
           DSL++ Y+RD  PD+
Sbjct: 669 DSLISVYERDITPDT 683


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 55  CAIASAAECENATSL 99
           C I + AECEN+ ++
Sbjct: 197 CVICNEAECENSNAI 211


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 85  NATSLSLMIDSLLATYDRDSPPDSKIV 165
           +A SL L    LLA  DR++  ++K++
Sbjct: 270 DAESLKLAASRLLALADREADNNAKLI 296


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 116 ESIMRDSDVAFSHSAALAIAQVRRNGNRI 30
           ESI R  DVA +H+A   I     +GN I
Sbjct: 905 ESI-RKQDVAIAHNAYYIITDYDFDGNHI 932


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,630
Number of Sequences: 5004
Number of extensions: 9408
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)