Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l07
         (165 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   3.1  
SB_12530| Best HMM Match : I-set (HMM E-Value=3e-05)                   27   3.1  
SB_25168| Best HMM Match : C_tripleX (HMM E-Value=1.1)                 26   4.1  
SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.2  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 25   9.5  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         25   9.5  
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)                25   9.5  

>SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1846

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 65  LVRQNAKTQHHCPS*STRSSQRTIGT--PPPTP 157
           +VR+N + +  C S + R  +  +G   PPPTP
Sbjct: 630 IVRRNNQIEFSCKSSNGRQKRACVGVKDPPPTP 662


>SB_12530| Best HMM Match : I-set (HMM E-Value=3e-05)
          Length = 127

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 69  CGRMRKRNITVPHDRLAPRNVRSGLPP 149
           C +   R+ T+   R+ PR V  G+PP
Sbjct: 86  CAQEVTRSFTITAKRIGPRRVPCGIPP 112


>SB_25168| Best HMM Match : C_tripleX (HMM E-Value=1.1)
          Length = 201

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 7   HKMSTTYIILLPFLLTCAIASAAECENATSLSLMIDSLL 123
           +++STTYI+    L+T A+ + A C  +   +  ID ++
Sbjct: 15  NQISTTYIMNHAVLVTLAMCAVAACMGSVQANDWIDDMV 53


>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1801

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 1   SCHKMSTTYIILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIV 165
           S H M+    I++P L++  +A + + +NA    LM   +L    +D   +S IV
Sbjct: 419 SSHNMTALLQIVIPQLVSGVVAESLDVDNAQKCPLM--DILICLLKDLQLESHIV 471


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 82   ENATSLSLMIDSLLATYDRDSPPDS 156
            ENA   SL+ID + A    DSP ++
Sbjct: 3603 ENADEYSLLIDDINAAMTADSPTET 3627


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 46   LLTCAIASAAECENATSL 99
            L+ CA+    +CEN+TS+
Sbjct: 1548 LIPCAVGDNGQCENSTSV 1565


>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 74  QNAKTQHHCPS*STRSSQRTIGTPPPTPKS 163
           Q    Q H P  S     R   TPPP PKS
Sbjct: 199 QRRAGQGHTPYASKTHPLRRQNTPPPPPKS 228


>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
          Length = 617

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 52  TCAIASAAECENATSLSLMIDSLLATYDRDSPPDS 156
           TC  A   +  N  SL L+ D+ L +YD D   D+
Sbjct: 232 TCQQAVLLQPSNNRSLYLLGDAQLRSYDNDPASDN 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,524,189
Number of Sequences: 59808
Number of extensions: 77145
Number of successful extensions: 234
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 16,821,457
effective HSP length: 34
effective length of database: 14,787,985
effective search space used: 295759700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)