Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l07
         (165 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   0.085
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    20   2.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   3.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   3.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       19   4.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   4.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   7.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    18   9.7  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    18   9.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    18   9.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    18   9.7  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 25.0 bits (52), Expect = 0.085
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 25  YIILLPFLLTCAIAS-AAECENATSLSLMIDSLLAT 129
           Y ILL  L+TC I S +  C   T  S + D ++AT
Sbjct: 3   YSILLSLLITCLICSPSVHC--GTRPSFVSDEMIAT 36


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
          peptide protein.
          Length = 50

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = +3

Query: 42 VSPHLCYS*CGR 77
          + PH+C   CG+
Sbjct: 37 IKPHICRKICGK 48


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 85  NATSLSLMIDSLLATYDRDSPPD 153
           N  ++S ++DS   +YD+   P+
Sbjct: 8   NDVNISAILDSFSVSYDKRVRPN 30


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 85  NATSLSLMIDSLLATYDRDSPPD 153
           N  ++S ++DS   +YD+   P+
Sbjct: 8   NDVNISAILDSFSVSYDKRVRPN 30


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 86  TQHHCPS*STRSSQRTIGTPPPTP 157
           TQ   P  + +S Q + G P P P
Sbjct: 2   TQQKQPIITQQSQQPSSGAPGPQP 25


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 152 SGGESRSYVARSESIMRDSDV 90
           SGG       RSES++   D+
Sbjct: 37  SGGSDWRVAGRSESVVIPGDI 57


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 123 RNVRSGLPPRLQNR 164
           R  R  L PR++NR
Sbjct: 729 RQHRDSLSPRVENR 742


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
          protein.
          Length = 169

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 24 LYYSVTVSPHLC 59
          L YSV +S  LC
Sbjct: 10 LLYSVAMSQRLC 21


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
          protein.
          Length = 168

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 24 LYYSVTVSPHLC 59
          L YSV +S  LC
Sbjct: 9  LLYSVAMSQRLC 20


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/30 (23%), Positives = 14/30 (46%)
 Frame = +1

Query: 49  LTCAIASAAECENATSLSLMIDSLLATYDR 138
           ++C +A        +    + D LL+ Y+R
Sbjct: 5   ISCLVAPFPGASANSEAKRLYDDLLSNYNR 34


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -1

Query: 102 GQ*CCVFAFCRTSYSTSEEK 43
           G+ CC   F  T Y   + K
Sbjct: 602 GEQCCWHCFNCTQYQIRDHK 621


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,767
Number of Sequences: 438
Number of extensions: 636
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 34
effective length of database: 131,451
effective search space used:  2629020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)