Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19l02
(285 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 1.2
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 26 1.2
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 25 1.6
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 2.1
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 2.8
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 2.8
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 25 2.8
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 24 3.7
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 24 4.9
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 23 6.5
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 23 6.5
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 23 6.5
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 23 8.5
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 23 8.5
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 23 8.5
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 23 8.5
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 23 8.5
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 1.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 77 EAPWLRCLSSLCKLNQLASKRSFC 6
+AP L LS++C + + KR FC
Sbjct: 967 DAPALSLLSAVCAYDYASDKRKFC 990
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.8 bits (54), Expect = 1.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 268 VIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLCSKFL 92
+++ T +KL D H L IP S F+E + V CD D + LC ++L
Sbjct: 207 ILWDTSDNKLGTDGTHVQELPIPESHMERFIEARNALVMSLCDVD------ETLCDEYL 259
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 1.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 136 QSHTLGQRTTCTPPESCSKVKKE*LTNM-HENHQLLIYV 249
QSH L + TP + ++ E L+NM H NH +L YV
Sbjct: 270 QSHPLSSVASGTPSANAILLE-ELLSNMLHANHPILDYV 307
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.0 bits (52), Expect = 2.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 124 RISRQSHTLGQRTTCTPPESCSKVKK 201
++ ++S +T TPP+ CS +KK
Sbjct: 36 QMKKESLAASVKTPSTPPKECSHLKK 61
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 2.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 117 NVTNLTSESHLGPTDDLHTSRKLFQS 194
+V+ L+S SHL PT +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 2.8
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +2
Query: 68 KVLRRSLKQEFRAEALKRDESHVRVTPWANGRPAHL 175
K + S + FR RD+ + P +N P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 24.6 bits (51), Expect = 2.8
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 214 WLTIPSSLWNSFLEVCR 164
WL+IP+S W++F + +
Sbjct: 507 WLSIPASRWSTFYDASK 523
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 24.2 bits (50), Expect = 3.7
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 283 FFLNSVIYCTILHKLIVDDF 224
F+LN V C I+H+++ + F
Sbjct: 392 FWLNQVELCKIIHRMLTEVF 411
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 23.8 bits (49), Expect = 4.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 117 NVTNLTSESHLGPTDDLHTSRKLFQSEEGI 206
++TNLT D L T LF++E+G+
Sbjct: 573 SLTNLTFNDRCALVDLLITKLALFEAEKGV 602
>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 23.4 bits (48), Expect = 6.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 130 SRQSHTLGQRTTCT 171
SRQS TL RT CT
Sbjct: 132 SRQSGTLNNRTLCT 145
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 23.4 bits (48), Expect = 6.5
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 67 QGASQVTKARISSRGVET*RISRQSHTLGQRTTCTPPESCSKVKKE*LTNMHENHQL 237
Q + K I SR + R+ + S RTT TPP S S K+ L + + +L
Sbjct: 322 QELPSLNKLSIQSRAFKKMRLPKIS-----RTTDTPPASTSNSNKKNLDKLKKMRKL 373
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 23.4 bits (48), Expect = 6.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 113 TPLLEILALVTCEAPWLRCLSSLCKLN 33
TP + + VT + PWL L CK N
Sbjct: 207 TPGTILPSTVTVKTPWLSVLPFNCKKN 233
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 23.0 bits (47), Expect = 8.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 250 LHKLIVDDFHACWLTI 203
+H+L + F ACWL I
Sbjct: 158 IHELASNSFGACWLWI 173
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 23.0 bits (47), Expect = 8.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 122 HVSTPLLEILALVTCEAPWLRCLSSLCKL 36
++ T + LV C AP + C SS C L
Sbjct: 761 NIGTIKASLEVLVKCIAPIIPCFSSECWL 789
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 151 PRCDSDVRFVTFQRLCSK 98
P CDS VR T R+C +
Sbjct: 31 PICDSHVRPTTLVRICDE 48
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 166 RSSVGPRCDSDVRFVTFQR 110
RSS+ P DS++R TF++
Sbjct: 21 RSSINPILDSELRDKTFEK 39
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 101 RAEALKRDESHVRVT 145
R EAL R +SH R+T
Sbjct: 45 RVEALDRQQSHSRIT 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,155,232
Number of Sequences: 5004
Number of extensions: 19843
Number of successful extensions: 67
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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