Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19l02
(285 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042 59 6e-10
01_07_0150 + 41508546-41508636,41509384-41510343,41511082-415115... 29 0.76
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 27 3.1
02_04_0349 + 22222091-22222639,22222718-22223695 27 3.1
04_01_0024 + 344621-344830,344926-345705 26 5.4
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 25 9.4
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 25 9.4
04_03_0353 - 14785648-14787213 25 9.4
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521... 25 9.4
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128... 25 9.4
02_05_0801 + 31824548-31825064,31825231-31826171 25 9.4
>08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042
Length = 104
Score = 58.8 bits (136), Expect = 6e-10
Identities = 22/48 (45%), Positives = 35/48 (72%)
Frame = +2
Query: 20 WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGR 163
WR AG+TYI YSN+ A ++RR LK+ ++EA R++ H ++ WA+G+
Sbjct: 11 WRAAGMTYIGYSNVCAALVRRCLKEPHKSEAASREKVHFAISKWADGK 58
>01_07_0150 +
41508546-41508636,41509384-41510343,41511082-41511555,
41511642-41511736
Length = 539
Score = 28.7 bits (61), Expect = 0.76
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 241 LIVDDFHACWLTIPSSLWNSFLEVCRSSVGPRCDS 137
++VDD+ C+ T+ + L +S E C S CD+
Sbjct: 157 IVVDDWTKCYGTVQTFLHSSDAESCSDSFKGECDA 191
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 277 LNSVIYCTILHKLIVDDFHACWLTIPSSLWN 185
L+ ++ T L +L++DD C L +PS N
Sbjct: 452 LDLLLLATDLRQLVIDDVDCCDLDVPSEFDN 482
>02_04_0349 + 22222091-22222639,22222718-22223695
Length = 508
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 194 TLEQLSGGVQVVRWP 150
TLE LSGGV ++ WP
Sbjct: 406 TLESLSGGVPMLSWP 420
>04_01_0024 + 344621-344830,344926-345705
Length = 329
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 59 IAAKVLRRSLKQEFRAEALKRDESHVRV-TPW 151
+ V RR +KQE RAEA K + V PW
Sbjct: 273 VTVLVERRMVKQEHRAEAYKLYQKRTSVWIPW 304
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 217 CWLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLCSKF 95
C+ + +S +SF ++ +SSVG SDV+ LC+ F
Sbjct: 402 CYQMVNNSS-SSFADMLKSSVGDLLPSDVQDKICHLLCNHF 441
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +1
Query: 1 D*QN-ERLEASWFNLHKL 51
D QN E+L SW NLHKL
Sbjct: 865 DKQNLEKLRLSWTNLHKL 882
>04_03_0353 - 14785648-14787213
Length = 521
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 194 TLEQLSGGVQVVRWP 150
TLE ++GGV +V WP
Sbjct: 425 TLESIAGGVPMVCWP 439
>04_01_0399 -
5214183-5214206,5215437-5215502,5219537-5219635,
5219746-5219817,5219918-5220491,5220575-5220687,
5220842-5220941,5221059-5221181,5221268-5221335,
5221461-5221610,5221715-5221858,5222097-5222288,
5222710-5222794,5222892-5223043,5223138-5223296,
5223552-5223605,5223698-5223836,5223955-5224088,
5224200-5225117
Length = 1121
Score = 25.0 bits (52), Expect = 9.4
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = -2
Query: 215 LVNYSFFTLEQLSGGVQVVRWPKV*L*REIRHVSTPLLEILALVTCEAPWLRCLSSL 45
LV++SF +LE+ GG++V L +R + EI L T W +CL L
Sbjct: 268 LVHFSFPSLERTYGGIKVSNKKAAALAEIVRFSTNRAGEIGKLST---EWTKCLVPL 321
>04_01_0123 -
1283197-1283292,1283330-1284439,1284790-1285177,
1285523-1287609
Length = 1226
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 28 SWFNLHKLLKHRSQGASQVTKARISSRGVET*RISRQSHT 147
SW+++HK KH Q R R + I R S T
Sbjct: 62 SWYSIHKTRKHTLQACWVFLNVRAEIRACKERGIQRISPT 101
>02_05_0801 + 31824548-31825064,31825231-31826171
Length = 485
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 194 TLEQLSGGVQVVRWP 150
TLE L+ GV V+ WP
Sbjct: 386 TLESLAAGVPVISWP 400
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,475,904
Number of Sequences: 37544
Number of extensions: 130925
Number of successful extensions: 349
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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