Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l02
         (285 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)               29   0.45 
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    29   0.45 
SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)                   29   0.79 
SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)             28   1.4  
SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)                   27   3.2  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.2  
SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_38239| Best HMM Match : YopE (HMM E-Value=7.2)                      26   5.6  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_27352| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_55610| Best HMM Match : DUF361 (HMM E-Value=4.8)                    25   7.4  
SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.4  
SB_52410| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_34416| Best HMM Match : Peptidase_C1 (HMM E-Value=2e-09)            25   9.8  

>SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)
          Length = 440

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -3

Query: 283 FFLNSVIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVG 152
           F L  VI+ T+++    D+ +  +L+IP  +W + + +  +  G
Sbjct: 331 FSLGVVIFATVIYYCEKDELNTSFLSIPDGMWYAIVTMTTTGYG 374


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 277 LNSVIYCTILHKLIVDDFHAC-WLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRL 107
           ++SV  C  +H + V     C +  + SSLW  F E+     G RC S  +FVT +RL
Sbjct: 314 MSSVRGCRYVHNVRVSLCTLCAFRYVHSSLW--FSELFGKRFGTRCRSCDKFVTERRL 369


>SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)
          Length = 321

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 178 LEVCRSSVGPRCDSDVRFVTFQRLCSK 98
           L  C SSV PR D+D R +TF+  C K
Sbjct: 291 LNHCTSSVPPRFDND-RQITFKEACKK 316


>SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)
          Length = 190

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 178 LEVCRSSVGPRCDSDVRFVTFQRLCSK 98
           L  C SSV PR D+D R +TF   C K
Sbjct: 160 LNHCTSSVPPRFDND-RQITFTEACKK 185


>SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 178 LEVCRSSVGPRCDSDVRFVTFQRLCSK 98
           L  C SSV PR D+D R +TF   C K
Sbjct: 507 LNHCTSSVPPRFDND-RQITFTEACKK 532


>SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 98  FRAEALKRDESHVRVTPWANGRPAH 172
           FR   L   +S VR +PWA  RPA+
Sbjct: 105 FRGPPLFAPKSRVRASPWACTRPAY 129


>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 220 ACWLTIPSSLWNSFLEVCRSSVGPRC 143
           AC+L IP ++ N  ++ C++ V  +C
Sbjct: 69  ACYLDIPGNMVNEEVQACKAKVFSQC 94


>SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 178 LEVCRSSVGPRCDSDVRFVTFQRLCS 101
           L  C SSV PR D+D R +TF+  C+
Sbjct: 225 LNHCTSSVPPRFDND-RQITFKEACA 249


>SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 7   QNERLEASWFNLHKLLKHRSQGASQVTKARISSRGVET*RISRQSHTLGQRTTCTP 174
           +NER+ A+W  +++ LK  ++   + T  R++ R       SR S  +G + T  P
Sbjct: 152 RNERISATWMCVYRSLKQFAKVFGEETGGRMTIRSA-----SRHSIKVGPQETLIP 202


>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1013

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 98  FRAEALKRDESHVRVTPWANGRPAH 172
           F A  L   +S VR +PWA  RPA+
Sbjct: 832 FAAPPLFAPKSRVRASPWACTRPAY 856


>SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)
          Length = 483

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 98  FRAEALKRDESHVRVTPWANGRPAH 172
           F A  L   +S VR +PWA  RPA+
Sbjct: 353 FAAPPLFAPKSRVRASPWACTRPAY 377


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 142  HTLGQRTTCTPPESCSKVKKE 204
            H  GQ    TPP+SCS + ++
Sbjct: 1227 HNYGQPPPMTPPDSCSPIPED 1247


>SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = +1

Query: 34  FNLHKLLKHRSQGASQVTKARISSRGVET*RISRQSHTLGQRTTCTPPESCSKVKKE*LT 213
           +NL   +K  S     VT     + G     +S Q+H     T  + PE     +KE + 
Sbjct: 523 YNLINKVKAASSAHDTVTSLMEDTLGGNKGEVSEQAHVTASSTKESVPEENENEEKEGID 582

Query: 214 NMHENH 231
           +  E H
Sbjct: 583 DDLETH 588


>SB_38239| Best HMM Match : YopE (HMM E-Value=7.2)
          Length = 247

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = +1

Query: 34  FNLHKLLKHRSQGASQVTKARISSRGVET*RISRQSHTLGQRTTCTPPESCSKVKKE*LT 213
           +NL   +K  S     VT     + G     +S Q+H     T  + PE     +KE + 
Sbjct: 86  YNLINKVKAASSAHDTVTSLMEDTLGGNKGEVSEQAHVTASSTKESVPEENENEEKEGID 145

Query: 214 NMHENH 231
           +  E H
Sbjct: 146 DDLETH 151


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 169  CRSSVGPRCD-SDVRFVTFQRLCSK 98
            C+  V PRCD S VR  + Q+  SK
Sbjct: 3229 CQPEVAPRCDTSQVRLASTQQCVSK 3253


>SB_27352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = +1

Query: 34  FNLHKLLKHRSQGASQVTKARISSRGVET*RISRQSHTLGQRTTCTPPESCSKVKKE*LT 213
           +NL   +K  S     VT     + G     +S Q+H     T  + PE     +KE + 
Sbjct: 86  YNLINKVKAASSAHDTVTSLMEDTLGGNKGEVSEQAHVTASSTKESVPEENENEEKEGID 145

Query: 214 NMHENH 231
           +  E H
Sbjct: 146 DDLETH 151


>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = +1

Query: 34  FNLHKLLKHRSQGASQVTKARISSRGVET*RISRQSHTLGQRTTCTPPESCSKVKKE*LT 213
           +NL   +K  S     VT     + G     +S Q+H     T  + PE     +KE + 
Sbjct: 496 YNLINKVKAASSAHDTVTSLMEDTLGGNKGEVSEQAHVTASSTKESVPEENENEEKEGID 555

Query: 214 NMHENH 231
           +  E H
Sbjct: 556 DDLETH 561


>SB_55610| Best HMM Match : DUF361 (HMM E-Value=4.8)
          Length = 158

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 184 SFLEVCRSSVGPRCDSDVRFVTFQRL 107
           SF+  C  SV  +CD DV+ V+ QR+
Sbjct: 54  SFVSRCCRSV--KCDPDVKLVSLQRI 77


>SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 23  RQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESH 133
           R   +TY N+S+  A+  + +  Q+ R E ++    H
Sbjct: 349 RAKSVTYANFSSTEARRAKTTSSQDIRTEQIQASRYH 385


>SB_52410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 205 IPSSLWNSFLEVCRSSVGP 149
           IPSSL   F+E CR +  P
Sbjct: 254 IPSSLAKDFMEFCRKNPAP 272


>SB_34416| Best HMM Match : Peptidase_C1 (HMM E-Value=2e-09)
          Length = 817

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 211 LTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLC 104
           + +  SL    LE+    + P CDSD+  +  Q LC
Sbjct: 560 VNVVESLAGKVLELPPQGI-PSCDSDIYSIALQLLC 594


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,698,676
Number of Sequences: 59808
Number of extensions: 150773
Number of successful extensions: 404
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 303237528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)