Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19l02
(285 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016427-2|AAB65352.1| 54|Caenorhabditis elegans Hypothetical ... 55 7e-09
L23647-8|AAK29993.1| 54|Caenorhabditis elegans Hypothetical pr... 46 6e-06
L07144-2|AAK21439.1| 54|Caenorhabditis elegans Hypothetical pr... 46 6e-06
AL023835-14|CAA19489.2| 192|Caenorhabditis elegans Hypothetical... 27 2.2
Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical pr... 26 3.8
U50197-1|AAA91254.1| 329|Caenorhabditis elegans Hypothetical pr... 26 3.8
Z92785-4|CAB07201.2| 352|Caenorhabditis elegans Hypothetical pr... 25 6.6
U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid elon... 25 6.6
Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical pr... 25 8.7
AL032636-5|CAA21607.2| 500|Caenorhabditis elegans Hypothetical ... 25 8.7
>AF016427-2|AAB65352.1| 54|Caenorhabditis elegans Hypothetical
protein F32D1.2 protein.
Length = 54
Score = 55.2 bits (127), Expect = 7e-09
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +2
Query: 11 MSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGR 163
M AWR AGL Y+ YS IAA++ R+ KQ A+K+ E+ +++T W NG+
Sbjct: 1 MVAWRAAGLNYVRYSQIAAEITRKCTKQVGGKAAVKKPEATLKITTWENGK 51
>L23647-8|AAK29993.1| 54|Caenorhabditis elegans Hypothetical
protein ZC262.5 protein.
Length = 54
Score = 45.6 bits (103), Expect = 6e-06
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +2
Query: 11 MSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGR 163
M AWR AGL Y+ YS IAA+V+R+ K +K+ ++ ++ T W NG+
Sbjct: 1 MVAWRAAGLNYVRYSQIAAQVVRQCTK---GGANVKKPQATLKTTAWENGK 48
>L07144-2|AAK21439.1| 54|Caenorhabditis elegans Hypothetical
protein R05D3.6 protein.
Length = 54
Score = 45.6 bits (103), Expect = 6e-06
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +2
Query: 11 MSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGR 163
M AWR AGL Y+ YS IAA+V+R+ K +K+ ++ ++ T W NG+
Sbjct: 1 MVAWRAAGLNYVRYSQIAAQVVRQCTK---GGANVKKPQATLKTTAWENGK 48
>AL023835-14|CAA19489.2| 192|Caenorhabditis elegans Hypothetical
protein Y37A1B.4 protein.
Length = 192
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 126 NLTSESHLGPTDDLHTSRKLFQSEEGIV 209
N+ + H G +D +H RKL EG++
Sbjct: 162 NILPQKHQGASDVVHGRRKLMDDLEGVI 189
>Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical
protein F09B9.1 protein.
Length = 710
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -2
Query: 224 SCMLVNYSFF-TLEQLSGGVQVVRWPKV*L*REIRHVSTPLLEILALVTCEAPWLRCLSS 48
S +++ Y FF T + V V W + R +R ++ P++ + T AP+++ S
Sbjct: 316 SGLVLTYMFFKTTPKKKMIVNPVTWIMFYVHRYLR-LTPPIMLFIGFFTVYAPYIQGPFS 374
Query: 47 LCKLNQLASKRSFC 6
++NQL + C
Sbjct: 375 ASQMNQLVMEADEC 388
>U50197-1|AAA91254.1| 329|Caenorhabditis elegans Hypothetical
protein F25E2.1 protein.
Length = 329
Score = 26.2 bits (55), Expect = 3.8
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -1
Query: 219 HVG*LFLLHFGTAFWRCAGRPLAQ--GVTLT*DSSRFNASARNSCFSDLRSTLAAMFE*F 46
H+ FL + AF+ G + ++L+ + NAS ++CF RS + +F F
Sbjct: 103 HIPSQFLYYMTLAFYGSFGTMICAIVPISLSRVLALSNASLYSTCFGGRRSLIFCIFLDF 162
Query: 45 M*VKPACLQALILLI 1
+ P C+ LI ++
Sbjct: 163 L---PVCILYLICVV 174
>Z92785-4|CAB07201.2| 352|Caenorhabditis elegans Hypothetical
protein F31E9.3 protein.
Length = 352
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 38 TYINYSNIAAKVLRRSLKQEFRAEALKRD 124
TY+ Y NI AKV + ++E + +K D
Sbjct: 85 TYVEYKNIFAKVATKEEQKEIKKLDVKDD 113
>U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid
elongation protein 3 protein.
Length = 320
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 271 SVIYCTILH--KLIVDDFHACWLTIPSSLWNSFLEV 170
SV+Y ++ K I++ + L P +WNSFL +
Sbjct: 45 SVVYVAVIFTGKKIMEKYKPFQLDTPLFVWNSFLAI 80
>Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical
protein F35E8.6 protein.
Length = 272
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 277 LNSVIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSV 155
L ++++ + L+ +IVDDF T +S W VC + +
Sbjct: 8 LIAILFTSQLNAVIVDDFACTTNTAATSKWLPSSTVCSNVI 48
>AL032636-5|CAA21607.2| 500|Caenorhabditis elegans Hypothetical
protein Y40B1B.8 protein.
Length = 500
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 67 QGASQVTKARISSRGVET*RISRQSHTLGQRTTCTPPES 183
QG Q+ +A RG E R + Q H + Q + TPP S
Sbjct: 366 QGLQQLVRACFD-RGSELLRKATQGHPVVQSSQITPPIS 403
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,482,542
Number of Sequences: 27780
Number of extensions: 117637
Number of successful extensions: 274
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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