Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l02
         (285 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondri...    64   2e-11
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    29   0.50 
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote...    27   2.0  
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ...    27   2.0  
At3g14710.1 68416.m01860 F-box family protein   ; similar to SKP...    27   2.0  
At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transfera...    27   2.0  
At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transfera...    27   2.0  
At3g54260.1 68416.m05997 expressed protein various predicted pro...    26   4.6  
At1g69360.1 68414.m07960 expressed protein                             25   6.1  
At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transfera...    25   6.1  
At5g16110.1 68418.m01882 expressed protein hypothetical protein ...    25   8.1  
At3g48900.1 68416.m05342 single-strand DNA endonuclease, putativ...    25   8.1  
At1g22360.1 68414.m02797 UDP-glucoronosyl/UDP-glucosyl transfera...    25   8.1  

>At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondrial
           identical to ATP synthase epsilon chain, mitochondrial
           SP:Q96253 from [Arabidopsis thaliana]
          Length = 70

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 25/49 (51%), Positives = 37/49 (75%)
 Frame = +2

Query: 20  WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGRP 166
           WR AG+TYI+YSNI A ++R  LK+  +AEAL R++ H  ++ WA+G+P
Sbjct: 10  WRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKP 58


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase II SP:P27046 from [Mus
           musculus]
          Length = 1173

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 166 CTPPESCSKVKKE*LTNMHENHQLLIY 246
           C PP SCSK+  + +T +   HQ L++
Sbjct: 743 CPPPYSCSKLDND-VTEIRNEHQTLVF 768


>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 654

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 190 WNSFLEVCRSSVGPRCDSDVRFVTFQRL 107
           WNS   +C+S VG  C SD   V   RL
Sbjct: 67  WNSTNHICKSWVGVTCTSDGTSVHALRL 94


>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
           finger domain-containing protein-related contains Pfam
           profiles PF03468: XS domain, weak hit to PF03470: XS
           zinc finger domain
          Length = 625

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 7   QNERLEASWFNLHKLLKH-RSQGASQV 84
           QN      W+NLH LL H R++GA +V
Sbjct: 232 QNGPGAIDWYNLHPLLAHARTKGARRV 258


>At3g14710.1 68416.m01860 F-box family protein   ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 442

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 119 VSTPLLEILALVTCEAPWLRCLSSLCKLNQLASK 18
           + +PLL I  +  C +  +   S +CK+  LASK
Sbjct: 219 IDSPLLRIFEMFKCTSEHVPNPSQVCKIRVLASK 252


>At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glycosyltransferase family
          Length = 479

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 194 TLEQLSGGVQVVRWP 150
           TLE LSGGV +V WP
Sbjct: 381 TLESLSGGVPMVCWP 395


>At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glycosyltransferase family
          Length = 309

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 194 TLEQLSGGVQVVRWP 150
           TLE LSGGV +V WP
Sbjct: 211 TLESLSGGVPMVCWP 225


>At3g54260.1 68416.m05997 expressed protein various predicted
           proteins, Arabidopsis thaliana
          Length = 379

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 259 CTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTF 116
           C IL K+++  F   WL       N+ L+  R     RCD  V   TF
Sbjct: 14  CLILGKVVLSQFDELWLVGDDDPLNA-LQTRRERREERCDYSVGKWTF 60


>At1g69360.1 68414.m07960 expressed protein
          Length = 896

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 142 HTLGQRTTCTPPESCSKVKKE*LTNMHEN 228
           HT G  TTC P E   +V +      H N
Sbjct: 164 HTEGDNTTCPPYEQSKEVGENIFFESHRN 192


>At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase; similar
           to UDP-glucose glucosyltransferase GI:3928543 from
           [Arabidopsis thaliana]
          Length = 487

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 194 TLEQLSGGVQVVRWP 150
           TLE L+GGV ++ WP
Sbjct: 387 TLESLAGGVPMICWP 401


>At5g16110.1 68418.m01882 expressed protein hypothetical protein
           T26J14.6 - Arabidopsis thaliana, EMBL:AC011915
          Length = 244

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 40  LHKLLKHRSQGASQVTKARISSRGVET*RISRQSHTLGQRTTCTPP 177
           +  L  H SQ A+ +  ++  +  +E  R    + T+GQ  + +PP
Sbjct: 108 IRPLRLHMSQAAADLCDSKAGAELLEIIRRKEDNGTIGQLLSSSPP 153


>At3g48900.1 68416.m05342 single-strand DNA endonuclease, putative
           similar to single-strand DNA endonuclease-1 [Oryza
           sativa (japonica cultivar-group)]
           gi|16923283|dbj|BAB72003
          Length = 337

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 277 LNSVIYCTILHKLIVDDFHACWLTIPSSLWNSFL 176
           LNS   C  +   +  D   CW  +PS + NS +
Sbjct: 150 LNSESLCRNMPWSVERDSLVCWFLLPSDMVNSII 183


>At1g22360.1 68414.m02797 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 481

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 194 TLEQLSGGVQVVRWP 150
           TLE L GGV +V WP
Sbjct: 383 TLESLCGGVPMVCWP 397


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,003,533
Number of Sequences: 28952
Number of extensions: 104479
Number of successful extensions: 296
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)