Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19l01
         (275 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38480| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_45000| Best HMM Match : Cuticle_2 (HMM E-Value=1.8)                 26   5.4  

>SB_38480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 99  RERFY*KCLMFEDDKYFNRFTVRLPCTSVRQIS 1
           +E+ + KC++     Y+NRF  R+   +V+ IS
Sbjct: 75  KEKTFDKCIIVAVFIYWNRFLTRIVAAAVQDIS 107


>SB_45000| Best HMM Match : Cuticle_2 (HMM E-Value=1.8)
          Length = 218

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 123 LISKQLKSRERFY*KCLMFEDDKYFNRFTVR 31
           +ISK L++RERF  + + +     + RF +R
Sbjct: 17  VISKMLENRERFGIRAVWYTSGLVYERFGIR 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,340,574
Number of Sequences: 59808
Number of extensions: 60805
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 16,821,457
effective HSP length: 68
effective length of database: 12,754,513
effective search space used: 293353799
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)