Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k24
         (681 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin...   296   3e-79
UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protei...   183   4e-45
UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5; ...    34   2.8  
UniRef50_Q839Q8 Cluster: Seryl-tRNA synthetase 1 (EC 6.1.1.11) (...    34   3.7  
UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2; ...    33   4.9  
UniRef50_Q2H9I1 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, who...    33   6.4  
UniRef50_A5ZNR6 Cluster: Putative uncharacterized protein; n=5; ...    33   8.5  
UniRef50_A1SUA2 Cluster: Metal dependent phosphohydrolase; n=2; ...    33   8.5  

>UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin -
           Spodoptera littoralis nuclear polyhedrosis virus (SlNPV)
          Length = 249

 Score =  296 bits (727), Expect = 3e-79
 Identities = 127/152 (83%), Positives = 146/152 (96%)
 Frame = +1

Query: 226 PFLGPGKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDV 405
           PF+GPGKNQKLTLFKEIR+VKPDTMKLIVNW+GKEFLRETWTRF+EDSFPIVNDQEVMDV
Sbjct: 63  PFMGPGKNQKLTLFKEIRNVKPDTMKLIVNWNGKEFLRETWTRFMEDSFPIVNDQEVMDV 122

Query: 406 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGGC 585
           +LV N++PTRPNRC++FLAQHALR + +YVPH+VIRIVEPSYVG NNEYRISLAKKGGGC
Sbjct: 123 FLVVNMRPTRPNRCFRFLAQHALRCDPEYVPHDVIRIVEPSYVGTNNEYRISLAKKGGGC 182

Query: 586 PIMNIHSEYTNSFESFVNRVIWENFYKPIVYI 681
           P+MN+H+EYT SFESF+++VIW NFYKPIVY+
Sbjct: 183 PVMNLHAEYTTSFESFIDKVIWYNFYKPIVYV 214



 Score = 91.1 bits (216), Expect = 2e-17
 Identities = 39/65 (60%), Positives = 50/65 (76%)
 Frame = +3

Query: 60  YSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFFRT 239
           Y+Y+P +G+TYVYDNKYYKNLG +IKNAKRK   +E E +E++ D LD Y+VAEDPF   
Sbjct: 8   YNYSPHLGKTYVYDNKYYKNLGHVIKNAKRKHDALEREADERELDHLDKYLVAEDPFMGP 67

Query: 240 GQKPK 254
           G+  K
Sbjct: 68  GKNQK 72


>UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protein;
           n=4; Nucleopolyhedrovirus|Rep: Polyhedrin, major
           occlusion body protein - Neodiprion lecontii NPV
          Length = 247

 Score =  183 bits (445), Expect = 4e-45
 Identities = 79/157 (50%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
 Frame = +1

Query: 214 LPKIPFLGPGKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQE 393
           LP  P  GPGK+ K+ +F+E+R++K +TMKL +NWSG+E+LRE WT F+ED+FPI N QE
Sbjct: 57  LPLDPRTGPGKHVKMVMFQEVRNIKANTMKLAINWSGREYLREVWTTFIEDTFPINNYQE 116

Query: 394 VMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMNNEYRISLAKK 573
             DV+L     P + NR Y+FLAQH LR +ED+VP + IR++EP Y+   N   +SL K+
Sbjct: 117 FTDVFLEIRCTPNKSNRHYRFLAQHGLRMDEDFVPCDTIRVIEPEYL-QGNTVSLSLLKR 175

Query: 574 GGGCPIMNIHSEYTN-SFESFVNRVIWENFYKPIVYI 681
            GGCP+M I  ++     E FV+R++W +F++PIVYI
Sbjct: 176 DGGCPMMKIRQQFNELDLEQFVDRILWCHFHRPIVYI 212



 Score = 50.0 bits (114), Expect = 5e-05
 Identities = 22/56 (39%), Positives = 38/56 (67%)
 Frame = +3

Query: 75  TIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFFRTG 242
           T  ++Y+YDNKYY+ LG +I +AK++KH  + E+  ++   L+ +++  DP  RTG
Sbjct: 11  TSAKSYIYDNKYYRGLGDIINSAKKRKHDQDWEKHAEERRALNGFILPLDP--RTG 64


>UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 468

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 322 GKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKP--TRPNRCYKFLAQHALRWEEDY 492
           G EFL   +T FV+ ++  +N++   D+Y  A ++    +   C  F A     ++E+Y
Sbjct: 103 GIEFLTNIFTEFVKSTYKEINEENFYDIYDCATIQNDINKVEECISFFASKMNDFQEEY 161


>UniRef50_Q839Q8 Cluster: Seryl-tRNA synthetase 1 (EC 6.1.1.11)
           (Seryl-tRNA(Ser/Sec) synthetase 1); n=7; Bacteria|Rep:
           Seryl-tRNA synthetase 1 (EC 6.1.1.11)
           (Seryl-tRNA(Ser/Sec) synthetase 1) - Enterococcus
           faecalis (Streptococcus faecalis)
          Length = 423

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 108 YYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFFRTGQKPK 254
           YYK LG  ++ A     L +H  E    +++  Y+V     F TGQ PK
Sbjct: 165 YYKGLGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPK 213


>UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 623

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 308 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKK 487
           SST +  S  +      + T++P  T K   T TS+PTS   + T A  ++ +       
Sbjct: 162 SSTASVSSTILSSTATTMVTSTPT-TEKSSTTTTSTPTSEATSTTTAMITTTSGTTENPT 220

Query: 488 TT-CPTK*SELWSHPT 532
           TT CPTK      HPT
Sbjct: 221 TTDCPTKVCRYGFHPT 236


>UniRef50_Q2H9I1 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 447

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
 Frame = +1

Query: 67  TPPPSGVLTCTTINITKTWAVLSKTPSARST*S---NMNKRRSNGIF*TTTWLPKIPFLG 237
           T PP+G+L+ TT+      A    TPS+RST +   + N+ ++       T  P+ P  G
Sbjct: 257 TSPPTGMLSGTTLGARSYRAGGEPTPSSRSTFAPDDSYNQAKNTAPRRMQTPAPETP--G 314

Query: 238 PGKNQKLTLFKEIRSVKPDTMKLIVNWSGKEF-LRETWTRFVEDSFPIVNDQE 393
              N  + +FK  R    D    ++  + K++ +   W ++    + +  DQE
Sbjct: 315 AASNASVEIFKSFRVSMDDPCYKVLPAALKKYQINAPWDQYA--LYIVYGDQE 365


>UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus niger|Rep: Putative uncharacterized protein
           - Aspergillus niger
          Length = 329

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +2

Query: 308 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSP-TSNPHAPTGATSSSLNTLL 475
           S++ + ++  ++L P++L  ASP  +T   +T T+SP TS P   + ATS  L  +L
Sbjct: 39  SNSSSPRTMHIRLPPLMLPGASPRLSTLEPFTTTTSPSTSFPSPSSSATSDPLADIL 95


>UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_5, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2443

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = -1

Query: 117  FCNIYCRTR----KYARWWGCMNNSAY 49
            +CNI+ RTR      A +WGCMN S Y
Sbjct: 1648 YCNIWYRTRYSCENIANYWGCMNTSMY 1674


>UniRef50_A5ZNR6 Cluster: Putative uncharacterized protein; n=5;
           Bacteria|Rep: Putative uncharacterized protein -
           Ruminococcus obeum ATCC 29174
          Length = 227

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 439 NRCYKFLAQ--HALR-WEEDYVPHEVIRIVEPSYV 534
           NRC++ LA   H LR W ++Y PH    +  P +V
Sbjct: 127 NRCFRILADYLHLLRVWRKEYAPHSPEEVFHPRFV 161


>UniRef50_A1SUA2 Cluster: Metal dependent phosphohydrolase; n=2;
           Proteobacteria|Rep: Metal dependent phosphohydrolase -
           Psychromonas ingrahamii (strain 37)
          Length = 286

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 618 VGVLAVDVHDWAAAALFSQTNSVFVVHAHVGW 523
           VG+L + + DWA A LF  ++++ V     GW
Sbjct: 16  VGILWISLSDWAVALLFQDSDNIIVAQNIKGW 47


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 748,063,525
Number of Sequences: 1657284
Number of extensions: 16218191
Number of successful extensions: 49028
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 46557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48955
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)