Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k24
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0348 - 3076395-3078236                                           30   1.5  
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    28   7.9  
01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357...    28   7.9  

>08_01_0348 - 3076395-3078236
          Length = 613

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = -2

Query: 398 ITSWSFTMGKLSSTKRVQVSRKN--SLPLQLTI--NFMVSGFTLRISLKRVSFWFLPGPK 231
           + SW+  +  LS +  V+ ++    ++P++ ++  N MVSGF     +     WF   P+
Sbjct: 111 VVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPE 170

Query: 230 KG 225
           KG
Sbjct: 171 KG 172


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 105  KYYKNLGCLIKNAKRKKHLVEHEQE-EKQWDLLDNYMVAEDPFF 233
            K+  N+   +   KRK+ LVE+ QE EK     D+ +  ED F+
Sbjct: 2330 KHTSNVLSKVHEQKRKQLLVEYNQEMEKLKQKYDSLLQKEDSFY 2373


>01_07_0242 +
           42234217-42234320,42234708-42235029,42235377-42235778,
           42235921-42236265,42236785-42236854,42237098-42237173,
           42237309-42237459
          Length = 489

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 499 HEVIRIV-EPSYVGMNNEYRISLAKKGGGCPIMNIHSE 609
           HE ++++ +P   G   EY   +A+  GG PI  I ++
Sbjct: 213 HETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,463,811
Number of Sequences: 37544
Number of extensions: 453442
Number of successful extensions: 1234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)