Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k24
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)          33   0.16 
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              28   6.1  
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)                    28   6.1  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  28   6.1  
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)                       28   8.0  
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)                       28   8.0  

>SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)
          Length = 735

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +3

Query: 72  PTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAE 221
           PT  RT+  D+K   ++  L+K  K +   + +E E K+W  L NYM AE
Sbjct: 87  PTFARTFAVDSKVTPSVIALLKQFKWEIVAIIYE-EWKKWVQLKNYMKAE 135


>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 407 TSSPTSNPHAPTGATSSSLNTLLGGKKTT--CPTK 505
           T S T  P  PT + +SS  +  GG KTT  C T+
Sbjct: 353 TGSRTRTPPTPTSSRASSRGSARGGAKTTKKCTTR 387


>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 765

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 416 PTSNPHAPTGATSSSLNTLLGGKKTTCPT 502
           P S  H+P  +T  S+NT+L  +   CP+
Sbjct: 703 PVSRYHSPRPSTCLSINTILHDQARACPS 731


>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
          Length = 186

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +1

Query: 253 KLTLF-KEIRSVKPDTM--KLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANL 423
           KL +F K+     PD +  ++++  S ++  RE W   +    PI     + + +   +L
Sbjct: 96  KLQIFVKQKLEGVPDKIMGRVVLGTSAEDLEREHWNEAMTAKKPIARWHSLREFH--NSL 153

Query: 424 KPTRPNRCYKFLA 462
            PTRPNR  K +A
Sbjct: 154 LPTRPNRTSKPIA 166


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 328 EFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKPTR 435
           E  RET  R  E+ FP++   E+    L+  LK T+
Sbjct: 170 ESCRETGKRVAEELFPVIAQDELSTPLLMGKLKRTK 205


>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 99  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 209
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 99  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 209
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,452,635
Number of Sequences: 59808
Number of extensions: 517602
Number of successful extensions: 1801
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1800
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)