Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k23
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.80 
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    27   3.2  
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    25   7.4  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   7.4  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   7.4  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   7.4  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   9.8  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   9.8  

>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -3

Query: 587 QGTQMHMRHRLRRKPLLLEAKISARGVRYKSATAYCDQTVLVKWS 453
           Q T   + H   RK   L A +S   V +   T  CD TVL+ WS
Sbjct: 453 QTTANAVEHFKLRKITALSAALSLGTVLFCLHTFLCDSTVLMTWS 497


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -2

Query: 654 FVTPSIC*PALLHTPADLLDAVPGYSDAHASP---PSTETV 541
           ++T  +  P+L    +D+L  VP Y+ + +SP   P+T ++
Sbjct: 245 YITTDLLSPSLTCFASDILQTVPEYTSSQSSPVLLPATPSI 285


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 588 PGYSDAHASPPSTETVAAGGKNKCAWRSVQECDSVLRSDGTGKVVI 451
           P +S A  S  +T    + G ++  ++S+  CDS LRS     +V+
Sbjct: 305 PSFS-ASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVV 349


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 322 CNYYRRDRAVCRKSKTPTPQDVSWHSSVKPLFGT*LYS*DREINDHFTSTV*SQY 486
           C  Y    A  +   + +P ++S HS+ +PL  T + S   +  D F+ +  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 524  FLPPAATVSVEGGDACASEYPGTASSKSAGVCSSAGQQMDGVT 652
            FL P+ T +V GG+   S+       K+  +C+++   M+ +T
Sbjct: 1058 FLNPSETAAVVGGNVLTSQRITDVILKAFSICAASQGCMNNLT 1100


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = -3

Query: 314 PKSRIRAVMTASMRLITLAFSRSTSRHISKARGFIPLLILSTRSEVVNKKK*ITQNWPNY 135
           P+   R V   +  L     SRS+S H  K+     +  ++++ E ++    + Q+ PN 
Sbjct: 136 PEQNTRPVSEVNASLDLNTASRSSSAHSVKSTSSATVTNVTSKKEAISATTSLAQSSPNL 195

Query: 134 IS 129
            S
Sbjct: 196 AS 197


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 470 PSDRNTLSHSCTERHAHLFLPP 535
           P+     SH C   H+HL  PP
Sbjct: 617 PASVKLTSHKCNHLHSHLDKPP 638


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +2

Query: 416 LEHNYTREIVRLMTTLPVPSDRNTLSHSCTERHAHLFLPPAATVSVEGGDACASEYPGTA 595
           L H+ T +       + +PS   T +++ +  H+ L  P A+T++     A     P  A
Sbjct: 401 LNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLA 460

Query: 596 SSKSA 610
           +  S+
Sbjct: 461 NHLSS 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,253
Number of Sequences: 5004
Number of extensions: 52821
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)