Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19k23
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0136 + 26174965-26175849,26176965-26177030,26177124-261772...    29   3.3  
09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356     29   4.4  
01_02_0080 + 10933064-10933945                                         29   4.4  
08_02_0053 + 11721658-11721689,11721960-11722710                       28   5.8  
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111     28   7.7  

>02_05_0136 +
           26174965-26175849,26176965-26177030,26177124-26177258,
           26177369-26177434,26177516-26177701,26177777-26177863,
           26177985-26178098,26178174-26178298,26178375-26178483,
           26179298-26179423,26179511-26179831,26180146-26180269,
           26180405-26180529
          Length = 822

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 530 PPAATVSVEG-GDACASEYPGTASSKSAG 613
           PPAA  +VE  GD   +  PG ASS S+G
Sbjct: 66  PPAARANVEREGDGAEASGPGEASSSSSG 94


>09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356
          Length = 292

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +2

Query: 473 SDRNTLSHSCTERHAHLFLPPAATVSVEG-GDACASEYPGTASSKSAGVCSSAGQQM 640
           +DR T  H      AHL   PA   SV+G G A  S + G   S +     + G  M
Sbjct: 202 NDRGTTEHHLPSDDAHLRSSPAPANSVDGAGHASCSFFSGANESMAPSDHFNIGDDM 258


>01_02_0080 + 10933064-10933945
          Length = 293

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +2

Query: 530 PPAATVSVEGGDACASEYPGTASSKSAGVCSSAGQQMDGVTN 655
           PP A         C S  P T +S  AG   + G+Q    TN
Sbjct: 166 PPCAAAPASHSGMCHSPDPSTTTSSMAGSSVTHGEQFPSSTN 207


>08_02_0053 + 11721658-11721689,11721960-11722710
          Length = 260

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 244 VDLENASVINLIDAVMTARI-LDLGVCCNYYRRDRAV 351
           +D  N    + ID  +T RI +D  VC +Y+R DR +
Sbjct: 78  LDDANIPSTSAIDTTITDRIFMDFSVCPSYFRSDRTL 114


>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
          Length = 553

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 569 MRHRLRRKPLLLEAKISARGVRYKSATAYCDQTVLVKWSLISRSHEYNYVPN 414
           MRH  + K L        + V Y + T++  Q    + SLI +SH   Y PN
Sbjct: 187 MRHTFKSKGLPTSHPEKRQNVVYPTTTSFVQQDTQCEISLI-QSHMTTYFPN 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,944,313
Number of Sequences: 37544
Number of extensions: 363442
Number of successful extensions: 1146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)